Variant report

Variant	rs4531415
Chromosome Location	chr10:52568998-52568999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52568484..52571195-chr10:52609335..52611357,3	K562	blood:
2	chr10:52568068..52571258-chr10:52571525..52575297,5	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10761546	0.87[ASN][1000 genomes]
rs10761548	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821706	0.81[ASN][1000 genomes]
rs10821825	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821859	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994489	0.88[ASN][1000 genomes]
rs10994492	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994504	0.88[ASN][1000 genomes]
rs12358745	0.88[ASN][1000 genomes]
rs16751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802531	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245009	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550168	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4617537	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935006	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4935007	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56033380	0.80[ASN][1000 genomes]
rs61858572	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479701	0.80[ASN][1000 genomes]
rs7074369	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7089428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089955	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7895606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913937	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917358	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52555200-52575800	Weak transcription	Pancreas	Pancrea
2	chr10:52563800-52569400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52565800-52575400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
5	chr10:52567200-52569200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:52567200-52574800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:52567400-52569400	Weak transcription	Fetal Intestine Small	intestine
8	chr10:52567400-52569600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:52567400-52570000	Enhancers	Liver	Liver
10	chr10:52567600-52569200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:52567600-52569800	Genic enhancers	HepG2	liver
12	chr10:52568200-52569000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:52568400-52569600	Weak transcription	NHDF-Ad	bronchial
14	chr10:52568400-52571400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:52568600-52569800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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