Variant report
| Variant | rs4532585 |
|---|---|
| Chromosome Location | chr8:63233294-63233295 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10090858 | 0.92[ASN][1000 genomes] |
| rs10095168 | 0.85[AMR][1000 genomes] |
| rs10099748 | 0.81[AMR][1000 genomes] |
| rs11778470 | 0.84[AMR][1000 genomes] |
| rs12216817 | 0.84[EUR][1000 genomes] |
| rs12548234 | 0.84[AMR][1000 genomes] |
| rs13249875 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13250200 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13252919 | 0.85[AMR][1000 genomes] |
| rs13261910 | 0.83[AMR][1000 genomes] |
| rs13271280 | 0.85[AMR][1000 genomes] |
| rs13281158 | 0.84[AMR][1000 genomes] |
| rs1552205 | 0.84[AMR][1000 genomes] |
| rs2351652 | 0.80[EUR][1000 genomes] |
| rs2351653 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs28556827 | 0.91[ASN][1000 genomes] |
| rs2882742 | 0.84[AMR][1000 genomes] |
| rs4532584 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7002566 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7017975 | 0.84[AMR][1000 genomes] |
| rs7827326 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7834815 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs900491 | 0.85[AMR][1000 genomes] |
| rs9643537 | 0.94[AMR][1000 genomes] |
| rs9792368 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019143 | chr8:63142202-63390820 | Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2757277 | chr8:63156123-63260182 | Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759621 | chr8:63156123-63260182 | Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv6225 | chr8:63214240-63262285 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv818635 | chr8:63215615-63245683 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63225600-63234400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
