Variant report

Variant	rs4540799
Chromosome Location	chr10:45930785-45930786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10751382	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10900226	0.83[EUR][1000 genomes]
rs10900227	0.84[EUR][1000 genomes]
rs2242332	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2242334	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291427	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3103182	0.85[EUR][1000 genomes]
rs3780913	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4949005	0.87[CHB][hapmap]
rs7099874	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7896175	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs7920317	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs9422648	0.84[EUR][1000 genomes]
rs9422656	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv895110	chr10:45912771-45953767	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45916600-45949200	Weak transcription	Gastric	stomach
2	chr10:45921400-45930800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:45921400-45931600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:45921800-45933800	Weak transcription	Esophagus	oesophagus
5	chr10:45925000-45940600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:45925000-45949200	Weak transcription	Lung	lung
7	chr10:45925800-45936200	Weak transcription	Placenta	Placenta
8	chr10:45927800-45930800	Strong transcription	Primary B cells from cord blood	blood
9	chr10:45928600-45930800	Enhancers	Fetal Thymus	thymus
10	chr10:45928800-45951000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:45929000-45931000	Weak transcription	Small Intestine	intestine
12	chr10:45929000-45934800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:45929200-45951600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:45929600-45934600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:45930000-45931800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr10:45930200-45930800	Enhancers	GM12878-XiMat	blood
17	chr10:45930200-45932400	Weak transcription	Pancreas	Pancrea
18	chr10:45930200-45934200	Weak transcription	Spleen	Spleen
19	chr10:45930200-45938400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:45930400-45932400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr10:45930400-45933200	Weak transcription	K562	blood
22	chr10:45930600-45934200	Weak transcription	Thymus	Thymus

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