Variant report

Variant	rs4543353
Chromosome Location	chr6:64312372-64312373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64282508..64284678-chr6:64310541..64312722,2	K562	blood:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10943902	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756357	0.81[ASN][1000 genomes]
rs1197897	0.93[CEU][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap]
rs1197898	0.81[ASN][1000 genomes]
rs1197901	0.82[ASN][1000 genomes]
rs1197902	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1197904	0.81[ASN][1000 genomes]
rs1197905	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs1211293	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1212827	0.81[ASN][1000 genomes]
rs1322415	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1322416	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570315	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1620671	0.93[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1622589	0.81[ASN][1000 genomes]
rs1630182	0.93[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1681942	0.93[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1681945	0.81[ASN][1000 genomes]
rs1681946	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs1681947	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs1681957	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs1744135	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs1744141	0.81[ASN][1000 genomes]
rs1744142	0.81[ASN][1000 genomes]
rs1744144	0.81[ASN][1000 genomes]
rs1744146	0.81[ASN][1000 genomes]
rs1744147	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs1744148	0.81[ASN][1000 genomes]
rs1744149	0.81[ASN][1000 genomes]
rs1744152	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1744153	0.82[CEU][hapmap]
rs1744155	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1779775	0.81[ASN][1000 genomes]
rs1779782	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2076874	0.83[JPT][hapmap]
rs2146149	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2146150	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2622274	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2622281	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2622293	0.81[ASN][1000 genomes]
rs2622298	0.81[ASN][1000 genomes]
rs2622304	0.81[ASN][1000 genomes]
rs2758224	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2758225	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2758234	0.81[ASN][1000 genomes]
rs2758236	0.81[ASN][1000 genomes]
rs2758237	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs2758238	0.81[ASN][1000 genomes]
rs2758242	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2758259	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2800038	0.84[ASN][1000 genomes]
rs2800044	0.81[ASN][1000 genomes]
rs2800045	0.81[ASN][1000 genomes]
rs2800048	0.92[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2800049	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2984458	0.81[ASN][1000 genomes]
rs4358600	1.00[JPT][hapmap]
rs4538688	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6454244	0.81[ASN][1000 genomes]
rs6905574	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6938965	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7738916	0.81[ASN][1000 genomes]
rs7773557	0.81[ASN][1000 genomes]
rs9294234	0.93[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9294269	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9353016	0.88[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9361838	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9449291	1.00[JPT][hapmap];0.89[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4543353	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links