Variant report

Variant	rs4548407
Chromosome Location	chr1:215309328-215309329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10127521	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10127656	0.88[AMR][1000 genomes]
rs10746454	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10746455	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10779640	0.88[AMR][1000 genomes]
rs10779642	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10779643	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10779649	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10779650	0.85[ASN][1000 genomes]
rs10779651	0.85[ASN][1000 genomes]
rs10779652	0.85[ASN][1000 genomes]
rs10864150	0.81[AMR][1000 genomes]
rs10864154	0.88[AMR][1000 genomes]
rs10864157	0.88[ASN][1000 genomes]
rs11120495	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11120497	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11120500	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1112101	0.82[ASN][1000 genomes]
rs12062098	0.87[ASN][1000 genomes]
rs12135076	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12138497	0.84[ASN][1000 genomes]
rs12141874	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12410041	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12411068	0.85[ASN][1000 genomes]
rs12567520	0.87[ASN][1000 genomes]
rs12742137	0.88[AMR][1000 genomes]
rs1361340	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416647	0.82[ASN][1000 genomes]
rs1578137	0.82[ASN][1000 genomes]
rs2363556	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2363557	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2363558	0.83[AMR][1000 genomes]
rs2363559	0.83[AMR][1000 genomes]
rs2363560	0.82[AMR][1000 genomes]
rs2363566	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2363567	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2885813	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2885815	0.85[AMR][1000 genomes]
rs3931585	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4262516	0.83[EUR][1000 genomes]
rs4269745	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4300189	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4303048	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4375232	0.82[EUR][1000 genomes]
rs4531266	0.87[AMR][1000 genomes]
rs4571941	0.87[AMR][1000 genomes]
rs4607848	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655277	0.85[ASN][1000 genomes]
rs4655278	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655393	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4655394	0.84[ASN][1000 genomes]
rs4655395	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61818320	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61818328	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6657313	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6662353	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6673739	0.84[ASN][1000 genomes]
rs6675926	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6678758	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6684084	0.85[ASN][1000 genomes]
rs6688713	0.83[AMR][1000 genomes]
rs6695343	0.86[ASN][1000 genomes]
rs6695967	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6696333	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72735359	0.88[ASN][1000 genomes]
rs7513709	0.88[AMR][1000 genomes]
rs7516689	0.83[AMR][1000 genomes]
rs7540029	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7541543	0.88[AMR][1000 genomes]
rs7547572	0.84[ASN][1000 genomes]
rs7547655	0.86[AMR][1000 genomes]
rs9793382	0.82[ASN][1000 genomes]
rs9793690	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215305800-215314600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215306000-215313600	Weak transcription	Osteobl	bone
3	chr1:215307200-215313600	Weak transcription	NHDF-Ad	bronchial
4	chr1:215307400-215315000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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