Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10749672	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10788829	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10888469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10888474	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466758	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1532400	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2036101	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3120648	0.89[AFR][1000 genomes]
rs3120657	0.83[AFR][1000 genomes]
rs3120658	0.83[AFR][1000 genomes]
rs3126057	0.87[AFR][1000 genomes]
rs3126064	0.87[AFR][1000 genomes]
rs4333850	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4845735	0.83[AMR][1000 genomes]
rs4845738	0.83[AMR][1000 genomes]
rs6587648	0.83[AMR][1000 genomes]
rs6587649	0.83[AMR][1000 genomes]
rs6587653	0.83[AMR][1000 genomes]
rs6587655	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520132	0.83[AMR][1000 genomes]
rs7523354	0.80[YRI][hapmap];0.95[AFR][1000 genomes]
rs7533656	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7534986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv947506	chr1:152203216-152223222	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv159214	chr1:152213931-152223706	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152218600-152224600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:152218800-152223200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:152219400-152230200	Weak transcription	Ovary	ovary
4	chr1:152219800-152224400	Enhancers	NHEK	skin
5	chr1:152220000-152221600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:152220600-152224000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:152220800-152230400	Weak transcription	Brain Angular Gyrus	brain
8	chr1:152221000-152222200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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