Variant report

Variant	rs4549708
Chromosome Location	chr7:104387048-104387049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11761636	1.00[EUR][1000 genomes]
rs1465342	1.00[EUR][1000 genomes]
rs17139722	1.00[EUR][1000 genomes]
rs17141055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385254	1.00[EUR][1000 genomes]
rs4140743	1.00[EUR][1000 genomes]
rs4357228	1.00[EUR][1000 genomes]
rs57123751	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57138274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57698969	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57935592	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61685636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944590	1.00[EUR][1000 genomes]
rs7784639	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104385600-104388400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:104386800-104388000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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