Variant report

Variant	rs45509091
Chromosome Location	chr4:175420395-175420396
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17060612	1.00[EUR][1000 genomes]
rs2247362	1.00[EUR][1000 genomes]
rs2251807	1.00[EUR][1000 genomes]
rs2253170	1.00[EUR][1000 genomes]
rs2253270	1.00[EUR][1000 genomes]
rs2254225	1.00[EUR][1000 genomes]
rs2254350	1.00[EUR][1000 genomes]
rs2255737	1.00[EUR][1000 genomes]
rs2555630	1.00[EUR][1000 genomes]
rs2555631	1.00[EUR][1000 genomes]
rs2555661	1.00[EUR][1000 genomes]
rs2555668	1.00[EUR][1000 genomes]
rs2612657	1.00[EUR][1000 genomes]
rs2612660	1.00[EUR][1000 genomes]
rs2612661	1.00[EUR][1000 genomes]
rs2612678	1.00[EUR][1000 genomes]
rs2612688	1.00[EUR][1000 genomes]
rs28539757	1.00[EUR][1000 genomes]
rs45525332	1.00[EUR][1000 genomes]
rs45527531	1.00[EUR][1000 genomes]
rs45557833	1.00[EUR][1000 genomes]
rs45577043	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45604244	1.00[EUR][1000 genomes]
rs56812046	1.00[EUR][1000 genomes]
rs6825010	1.00[EUR][1000 genomes]
rs6854261	1.00[AMR][1000 genomes]
rs72997311	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv880289	chr4:175412975-175437117	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv881270	chr4:175413296-175425619	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175409400-175424000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:175410000-175424600	Weak transcription	Fetal Stomach	stomach
4	chr4:175410000-175440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:175410800-175420800	Weak transcription	Lung	lung
6	chr4:175410800-175425400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:175410800-175430800	Weak transcription	Gastric	stomach
8	chr4:175410800-175440000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:175412000-175428400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr4:175414400-175428200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:175415400-175424000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:175415600-175427600	Enhancers	Stomach Mucosa	stomach
13	chr4:175418000-175438600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:175418600-175424000	Weak transcription	Hela-S3	cervix
15	chr4:175418600-175424400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:175418600-175424600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:175418600-175427000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:175418600-175427200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:175418600-175437800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:175418800-175421400	Enhancers	Fetal Intestine Large	intestine
21	chr4:175418800-175421400	Enhancers	Fetal Intestine Small	intestine
22	chr4:175418800-175427400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:175418800-175435600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:175419000-175421000	Enhancers	Primary T cells from cord blood	blood
25	chr4:175419200-175438600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:175419400-175431000	Weak transcription	Colonic Mucosa	Colon
27	chr4:175419600-175421600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr4:175419800-175423800	Weak transcription	Fetal Thymus	thymus
29	chr4:175420000-175420400	Weak transcription	Liver	Liver
30	chr4:175420000-175420600	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr4:175420000-175420800	Genic enhancers	A549	lung
32	chr4:175420200-175420400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr4:175420200-175420400	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr4:175420200-175420400	Enhancers	Small Intestine	intestine
35	chr4:175420200-175421000	Enhancers	Colon Smooth Muscle	Colon
36	chr4:175420200-175421000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr4:175420200-175421600	Strong transcription	Placenta	Placenta

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