Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10951600	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs10951601	0.84[CEU][hapmap]
rs10951602	0.83[CEU][hapmap]
rs11761411	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11768007	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12530511	0.91[EUR][1000 genomes]
rs12533451	0.84[CEU][hapmap]
rs12537044	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs17619162	0.83[CEU][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs2074935	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs2074937	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs2299139	0.83[CEU][hapmap]
rs3823619	0.84[CEU][hapmap]
rs4524676	0.81[CEU][hapmap]
rs60803367	0.97[EUR][1000 genomes]
rs73118050	0.99[EUR][1000 genomes]
rs73126485	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73126501	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73128428	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73130437	0.99[EUR][1000 genomes]
rs73130461	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4551241	HERPUD2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39326600-39327400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr7:39326600-39327400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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