Variant report

Variant	rs45512491
Chromosome Location	chr6:133056655-133056656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
VNN3	TF binding region
ENSG00000200534	Chromatin interaction
ENSG00000271488	Chromatin interaction
ENSG00000112303	Chromatin interaction
ENSG00000221500	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1016503	1.00[AFR][1000 genomes]
rs2251553	1.00[AFR][1000 genomes]
rs2840806	1.00[AFR][1000 genomes]
rs34114446	1.00[AFR][1000 genomes]
rs34647336	1.00[AFR][1000 genomes]
rs34815843	1.00[EUR][1000 genomes]
rs71574629	1.00[AFR][1000 genomes]
rs71574640	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:133052400-133058800	Enhancers	Stomach Mucosa	stomach
3	chr6:133053400-133056800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr6:133054400-133058400	Enhancers	HepG2	liver
5	chr6:133055000-133058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:133055200-133057800	Weak transcription	Small Intestine	intestine
7	chr6:133055200-133064800	Weak transcription	Primary T cells from cord blood	blood
8	chr6:133056000-133057200	Weak transcription	Hela-S3	cervix
9	chr6:133056000-133058000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:133056000-133058400	Enhancers	Liver	Liver
11	chr6:133056000-133059000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:133056200-133056800	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:133056400-133056800	Enhancers	Pancreas	Pancrea
14	chr6:133056600-133056800	Weak transcription	Primary B cells from cord blood	blood
15	chr6:133056600-133056800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:133056600-133056800	Enhancers	NHDF-Ad	bronchial
17	chr6:133056600-133058000	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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