Variant report

Variant	rs45525739
Chromosome Location	chr6:133005238-133005239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133005010..133007189-chr6:133011041..133014021,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2267949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2327274	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45513194	1.00[EUR][1000 genomes]
rs45585839	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45598231	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56823270	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57394265	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58233203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59566004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73559745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133002200-133014600	Strong transcription	Liver	Liver
2	chr6:133002400-133005600	Enhancers	HSMMtube	muscle
3	chr6:133003000-133005400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:133003000-133007200	Strong transcription	Duodenum Mucosa	Duodenum
5	chr6:133003000-133008200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:133003200-133005400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr6:133004200-133005800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:133004200-133006200	Enhancers	NHEK	skin
9	chr6:133004200-133006600	Enhancers	HMEC	breast
10	chr6:133004400-133005400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:133004400-133005600	Enhancers	Osteobl	bone
12	chr6:133004600-133005800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:133004800-133005600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:133004800-133005600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:133004800-133005800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:133004800-133016400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:133005000-133005600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:133005200-133005600	Enhancers	HSMM	muscle
19	chr6:133005200-133008400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:133005200-133008400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:133005200-133008800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:133005200-133011000	Weak transcription	Gastric	stomach

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