Variant report

Variant	rs4553232
Chromosome Location	chr1:172808338-172808339
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10218696	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10912482	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12066143	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12075908	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2422256	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34884278	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4916196	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6662018	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695422	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517810	0.91[CHB][hapmap]
rs7519046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172796000-172813800	Weak transcription	Small Intestine	intestine
2	chr1:172806200-172808400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:172806400-172808400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:172806600-172808800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:172806800-172809400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:172807000-172808400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:172807000-172808400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:172807000-172808400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:172807000-172808400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:172807000-172808800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:172807400-172808400	Enhancers	Dnd41	blood
12	chr1:172807600-172808400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr1:172808000-172808400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:172808200-172808400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:172808200-172808400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:172808200-172808600	Enhancers	NHEK	skin
17	chr1:172808200-172808800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr1:172808200-172808800	Enhancers	HMEC	breast
19	chr1:172808200-172813600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:172808200-172813800	Weak transcription	Primary T cells from cord blood	blood
21	chr1:172808200-172813800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:172808200-172814600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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