Variant report

Variant	rs4553929
Chromosome Location	chr3:23342362-23342363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11921580	0.83[AMR][1000 genomes]
rs11928344	0.83[AMR][1000 genomes]
rs12185989	0.83[AMR][1000 genomes]
rs12636682	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17343818	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17403650	0.83[AMR][1000 genomes]
rs57624654	0.84[AMR][1000 genomes]
rs57869672	0.83[AMR][1000 genomes]
rs60407944	0.80[AMR][1000 genomes]
rs6762615	0.80[AMR][1000 genomes]
rs6765562	0.83[AMR][1000 genomes]
rs6776770	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6792462	0.83[AMR][1000 genomes]
rs7610971	0.83[AMR][1000 genomes]
rs7611132	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7613733	0.83[AMR][1000 genomes]
rs7613969	0.80[AMR][1000 genomes]
rs7614926	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7622913	0.82[AMR][1000 genomes]
rs7632520	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7638405	0.83[AMR][1000 genomes]
rs7646505	0.83[AMR][1000 genomes]
rs7649682	0.83[AMR][1000 genomes]
rs7651175	0.83[AMR][1000 genomes]
rs903518	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv967177	chr3:23337450-23350050	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23337400-23343000	Weak transcription	Psoas Muscle	Psoas
2	chr3:23337600-23358400	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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