Variant report

Variant	rs45563031
Chromosome Location	chr14:65507654-65507655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65507176..65509632-chr14:65511790..65513484,2	MCF-7	breast:
2	chr14:65504810..65509793-chr14:65509914..65515088,5	K562	blood:
3	chr14:65506811..65508511-chr14:65534721..65536903,2	K562	blood:

Variant related genes	Relation type
ENSG00000266531	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2296322	0.90[EUR][1000 genomes]
rs45565742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55941898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56197624	0.90[EUR][1000 genomes]
rs56323926	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72728238	1.00[AFR][1000 genomes]
rs72728241	1.00[AFR][1000 genomes]
rs72728245	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72728253	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728257	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728258	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728261	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728268	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65454800-65513800	Weak transcription	Stomach Mucosa	stomach
2	chr14:65459400-65508000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:65464400-65521200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:65473800-65513800	Weak transcription	HMEC	breast
7	chr14:65475200-65509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:65483400-65528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:65489200-65514000	Weak transcription	Small Intestine	intestine
10	chr14:65493000-65521400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:65493400-65508200	Weak transcription	Colonic Mucosa	Colon
12	chr14:65496400-65513000	Strong transcription	Fetal Intestine Small	intestine
13	chr14:65496400-65515400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:65496800-65521200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:65500000-65507800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:65500200-65508000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:65500200-65509400	Weak transcription	NH-A	brain
18	chr14:65501200-65507800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:65501200-65507800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:65501600-65507800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:65501600-65513800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
23	chr14:65502000-65508000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:65502000-65521200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:65502200-65508000	Weak transcription	Brain Anterior Caudate	brain
26	chr14:65502200-65508200	Weak transcription	NHDF-Ad	bronchial
27	chr14:65502200-65512800	Weak transcription	Psoas Muscle	Psoas
28	chr14:65502200-65515800	Strong transcription	Fetal Muscle Leg	muscle
29	chr14:65502400-65509400	Weak transcription	Colon Smooth Muscle	Colon
30	chr14:65502400-65523400	Weak transcription	Right Atrium	heart
31	chr14:65505800-65513400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr14:65505800-65515600	Strong transcription	Fetal Stomach	stomach
33	chr14:65506000-65512000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr14:65506000-65518000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:65506200-65507800	Weak transcription	Fetal Heart	heart
36	chr14:65506200-65508600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr14:65506400-65508200	Weak transcription	HSMMtube	muscle
38	chr14:65506600-65509000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:65506600-65515600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:65506800-65515600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:65507000-65512200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr14:65507200-65508000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:65507200-65508400	Strong transcription	Pancreas	Pancrea
44	chr14:65507200-65508600	Genic enhancers	Primary hematopoietic stem cells	blood
45	chr14:65507200-65508800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr14:65507200-65509000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:65507200-65509600	Strong transcription	Brain Germinal Matrix	brain
48	chr14:65507200-65510000	Strong transcription	Esophagus	oesophagus
49	chr14:65507200-65510200	Strong transcription	A549	lung
50	chr14:65507200-65511800	Strong transcription	Stomach Smooth Muscle	stomach

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