Variant report

Variant	rs45584034
Chromosome Location	chr6:133051683-133051684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133049609..133052376-chr6:133137041..133138744,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VNN2-2	chr6:133051264-133051799	NONHSAT114971

Variant related genes	Relation type
ENSG00000221500	Chromatin interaction
ENSG00000200534	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs45489697	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:133044400-133052000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:133046400-133051800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:133048400-133052400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:133050000-133052400	Weak transcription	Stomach Mucosa	stomach
8	chr6:133050200-133055600	Weak transcription	NHDF-Ad	bronchial
9	chr6:133050400-133052600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133051000-133051800	Weak transcription	Liver	Liver
11	chr6:133051200-133052800	Enhancers	NHLF	lung
12	chr6:133051400-133052200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:133051400-133052600	Enhancers	Hela-S3	cervix
14	chr6:133051400-133052800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:133051600-133051800	Active TSS	A549	lung
16	chr6:133051600-133052000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:133051600-133052200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:133051600-133052400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:133051600-133052400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:133051600-133052600	Enhancers	HepG2	liver
21	chr6:133051600-133052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:133051600-133053800	Enhancers	Primary monocytes fromperipheralblood	blood

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