Variant report

Variant	rs45585839
Chromosome Location	chr6:133033692-133033693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2267949	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300075	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2327274	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45513194	1.00[EUR][1000 genomes]
rs45525739	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45598231	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56823270	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57394265	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58233203	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59566004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543029	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73559745	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133030800-133034400	Weak transcription	Placenta	Placenta
2	chr6:133032200-133034600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:133032400-133034600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:133032800-133034800	Active TSS	Duodenum Mucosa	Duodenum
5	chr6:133032800-133035200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:133033000-133034400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:133033000-133034800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:133033000-133035200	Active TSS	Liver	Liver
9	chr6:133033200-133035200	Enhancers	Stomach Mucosa	stomach
10	chr6:133033200-133035600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr6:133033400-133033800	Enhancers	Pancreas	Pancrea
12	chr6:133033400-133034000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:133033400-133034000	Enhancers	NHEK	skin
14	chr6:133033400-133034200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:133033400-133034400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:133033400-133035600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:133033600-133034000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:133033600-133034000	Enhancers	Osteobl	bone
19	chr6:133033600-133034800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:133033600-133035400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:133033600-133035800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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