Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1007512	0.84[EUR][1000 genomes]
rs11161851	0.84[ASN][1000 genomes]
rs11162201	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11162250	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11162302	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11162315	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11162359	0.82[ASN][1000 genomes]
rs11162360	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11162513	0.84[EUR][1000 genomes]
rs12021751	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12120668	0.89[ASN][1000 genomes]
rs1335095	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1413991	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1526507	0.84[EUR][1000 genomes]
rs1751463	0.82[ASN][1000 genomes]
rs1852347	0.83[EUR][1000 genomes]
rs2184492	0.81[ASN][1000 genomes]
rs277355	0.85[ASN][1000 genomes]
rs277359	0.82[ASN][1000 genomes]
rs277366	0.84[ASN][1000 genomes]
rs277367	0.84[ASN][1000 genomes]
rs4949725	0.84[EUR][1000 genomes]
rs6685645	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9787288	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1011649	chr1:75368484-75395405	Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4559444	USP33	cis	cerebellum	SCAN
rs4559444	C1orf173	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75373400-75374800	Enhancers	Liver	Liver

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