Variant report

Variant	rs4562096
Chromosome Location	chr6:81264175-81264176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81264062..81265646-chr6:81268549..81270670,2	MCF-7	breast:
2	chr6:81254930..81257563-chr6:81262833..81265650,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10452562	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1377981	1.00[EUR][1000 genomes]
rs1595245	1.00[MEX][hapmap]
rs16891800	1.00[EUR][1000 genomes]
rs16891960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1836960	1.00[EUR][1000 genomes]
rs4498303	1.00[EUR][1000 genomes]
rs4583942	1.00[EUR][1000 genomes]
rs56384135	1.00[EUR][1000 genomes]
rs56792199	1.00[EUR][1000 genomes]
rs57213893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57987456	1.00[EUR][1000 genomes]
rs61163277	1.00[EUR][1000 genomes]
rs6454160	1.00[EUR][1000 genomes]
rs6454173	1.00[EUR][1000 genomes]
rs6902405	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915165	0.83[AMR][1000 genomes]
rs6928467	1.00[EUR][1000 genomes]
rs6933538	1.00[EUR][1000 genomes]
rs6938082	1.00[EUR][1000 genomes]
rs73471450	1.00[EUR][1000 genomes]
rs73471494	1.00[EUR][1000 genomes]
rs73471501	1.00[EUR][1000 genomes]
rs73473428	1.00[EUR][1000 genomes]
rs73473435	1.00[EUR][1000 genomes]
rs73475610	1.00[EUR][1000 genomes]
rs73481828	1.00[EUR][1000 genomes]
rs73748607	1.00[EUR][1000 genomes]
rs73748610	1.00[EUR][1000 genomes]
rs73748616	1.00[EUR][1000 genomes]
rs7747214	1.00[EUR][1000 genomes]
rs7747880	1.00[EUR][1000 genomes]
rs7756784	1.00[EUR][1000 genomes]
rs7764790	1.00[TSI][hapmap]
rs7768308	1.00[EUR][1000 genomes]
rs7768835	1.00[EUR][1000 genomes]
rs7772770	1.00[EUR][1000 genomes]
rs7773470	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv998220	chr6:81258085-81298829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv522523	chr6:81262988-81298688	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81260800-81264600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:81261000-81266400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:81261600-81264200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:81261800-81264800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:81263400-81264400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links