Variant report

Variant	rs45624235
Chromosome Location	chr4:175437839-175437840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10520284	1.00[AFR][1000 genomes]
rs17060532	1.00[AFR][1000 genomes]
rs17060537	1.00[AFR][1000 genomes]
rs17294569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17294646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17358909	1.00[AFR][1000 genomes]
rs17359173	1.00[AFR][1000 genomes]
rs17360116	1.00[AFR][1000 genomes]
rs45455595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45499501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs45548931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45567139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs45592532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv880970	chr4:175434394-175444006	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175410000-175440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:175410800-175440000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:175418000-175438600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:175419200-175438600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:175420600-175441000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:175421000-175439200	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:175427400-175438400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:175427400-175440600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:175427400-175443000	Weak transcription	Lung	lung
11	chr4:175427600-175441800	Weak transcription	Fetal Thymus	thymus
12	chr4:175428000-175439400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:175429400-175441200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:175429400-175442600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:175431000-175442400	Weak transcription	Fetal Intestine Large	intestine
16	chr4:175432800-175441600	Weak transcription	Placenta	Placenta
17	chr4:175433200-175442600	Weak transcription	Fetal Intestine Small	intestine
18	chr4:175435800-175442000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:175436400-175439200	Weak transcription	Primary T cells from cord blood	blood
20	chr4:175436800-175441400	Weak transcription	Stomach Mucosa	stomach
21	chr4:175437200-175438200	Strong transcription	A549	lung
22	chr4:175437600-175439600	Enhancers	Liver	Liver
23	chr4:175437800-175438200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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