Variant report
Variant | rs4562675 |
---|---|
Chromosome Location | chr1:77362312-77362313 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11162233 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12131482 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1252485 | 0.97[ASN][1000 genomes] |
rs1252579 | 0.93[ASN][1000 genomes] |
rs1252586 | 0.84[ASN][1000 genomes] |
rs1273142 | 0.97[ASN][1000 genomes] |
rs1357331 | 0.96[ASN][1000 genomes] |
rs1403244 | 0.90[ASN][1000 genomes] |
rs1522621 | 0.84[ASN][1000 genomes] |
rs1522622 | 0.91[ASN][1000 genomes] |
rs1533849 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1533850 | 0.93[ASN][1000 genomes] |
rs1546319 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1718920 | 0.92[ASN][1000 genomes] |
rs1766286 | 0.92[ASN][1000 genomes] |
rs2103039 | 0.93[ASN][1000 genomes] |
rs2350526 | 0.95[ASN][1000 genomes] |
rs28858794 | 0.99[ASN][1000 genomes] |
rs34654786 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4949752 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4949753 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4949754 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6703662 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs71658713 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs71658714 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7419029 | 0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7535901 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9659921 | 0.99[ASN][1000 genomes] |
rs9660283 | 0.99[ASN][1000 genomes] |
rs9661727 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9662288 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9725074 | 0.92[ASN][1000 genomes] |
rs9727199 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9793293 | 0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003826 | chr1:76965331-77656929 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
2 | nsv535006 | chr1:76965331-77656929 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
3 | nsv1005649 | chr1:77141039-77398747 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
4 | nsv1003386 | chr1:77305197-77375536 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:77335000-77371000 | Weak transcription | Aorta | Aorta |
2 | chr1:77357000-77373200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
3 | chr1:77360600-77363600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
4 | chr1:77360600-77384800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |