Variant report

Variant	rs4569235
Chromosome Location	chr15:34633328-34633329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:34632943-34633336	HepG2	liver:	n/a	n/a
2	POLR2A	chr15:34633269-34633400	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:34632776..34635331-chr15:34879472..34881728,2	K562	blood:
2	chr15:34632008..34636763-chr15:34655757..34660926,8	K562	blood:
3	chr15:34632759..34637829-chr15:34654252..34657716,5	K562	blood:
4	chr15:34631461..34634427-chr15:34658346..34660565,2	K562	blood:
5	chr15:34537264..34538775-chr15:34630523..34633358,2	K562	blood:
6	chr15:34515820..34518714-chr15:34632646..34635084,3	MCF-7	breast:

No data

Variant related genes	Relation type
NUTM1	TF binding region
SLC12A6	TF binding region
ENSG00000140199	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000215252	Chromatin interaction

Extended variants
information (count: 146 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs104017	0.90[ASN][1000 genomes]
rs1045194	0.85[AMR][1000 genomes]
rs1045238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631094	0.85[ASN][1000 genomes]
rs12591967	0.83[ASN][1000 genomes]
rs12592913	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12593384	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595504	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs168335	0.80[ASN][1000 genomes]
rs16958910	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16958954	0.84[ASN][1000 genomes]
rs16958995	0.91[ASN][1000 genomes]
rs16959012	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959014	0.95[ASN][1000 genomes]
rs16959020	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16959021	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs180886	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1845773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186987	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126421	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2219668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615357	0.91[ASN][1000 genomes]
rs2644243	0.82[ASN][1000 genomes]
rs2644245	0.88[ASN][1000 genomes]
rs28539755	0.92[ASN][1000 genomes]
rs3063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34639726	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347805	0.83[ASN][1000 genomes]
rs347806	0.80[ASN][1000 genomes]
rs347807	0.80[ASN][1000 genomes]
rs347817	0.81[ASN][1000 genomes]
rs347827	0.88[ASN][1000 genomes]
rs347830	0.90[ASN][1000 genomes]
rs347831	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347832	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347833	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347834	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347835	0.82[ASN][1000 genomes]
rs347836	0.90[ASN][1000 genomes]
rs347837	0.94[ASN][1000 genomes]
rs347838	0.94[ASN][1000 genomes]
rs347842	0.84[ASN][1000 genomes]
rs347843	0.84[ASN][1000 genomes]
rs347847	0.82[ASN][1000 genomes]
rs347849	0.82[ASN][1000 genomes]
rs347851	0.82[ASN][1000 genomes]
rs347858	0.85[ASN][1000 genomes]
rs347861	0.81[ASN][1000 genomes]
rs380248	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs405080	0.82[ASN][1000 genomes]
rs422388	0.94[ASN][1000 genomes]
rs55745608	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56057955	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388838	0.83[AFR][1000 genomes]
rs56762274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57715165	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57875866	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58343025	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58401365	0.80[ASN][1000 genomes]
rs59375529	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59452641	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59802332	0.83[AFR][1000 genomes]
rs59861881	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60114685	0.84[ASN][1000 genomes]
rs60156693	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60539207	0.84[ASN][1000 genomes]
rs61376537	0.85[ASN][1000 genomes]
rs6495660	0.89[ASN][1000 genomes]
rs6495661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163195	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163919	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7166043	0.82[ASN][1000 genomes]
rs7166066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7169857	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7170785	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7175028	0.92[ASN][1000 genomes]
rs7176009	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176426	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7181260	0.80[AFR][1000 genomes]
rs7182584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72486679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374434	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73374455	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73374473	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73374475	0.95[ASN][1000 genomes]
rs73374477	0.95[ASN][1000 genomes]
rs73374490	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374491	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374493	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374500	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374502	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376010	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73390084	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73392004	0.84[ASN][1000 genomes]
rs7495538	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs756086	0.90[ASN][1000 genomes]
rs8023583	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8025057	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8031145	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031147	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031404	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8031958	0.95[ASN][1000 genomes]
rs8031961	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8032347	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8033032	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8037379	0.95[ASN][1000 genomes]
rs8038177	0.90[ASN][1000 genomes]
rs8042163	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8043005	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs924065	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9630418	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972305	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972323	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
24	nsv1039577	chr15:34624178-34962093	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
25	nsv542344	chr15:34624178-34962093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
26	nsv542345	chr15:34626815-34841586	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
27	nsv542346	chr15:34627015-34841447	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
28	nsv915918	chr15:34627109-34841422	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
29	nsv916680	chr15:34627109-34964198	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
30	esv1822549	chr15:34628041-34909164	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
31	nsv1038524	chr15:34628041-34962093	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
32	nsv542347	chr15:34628041-34962093	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs4569235	NOP10	cis	Esophagus Muscularis	GTEx
rs4569235	NOP10	cis	Heart Left Ventricle	GTEx
rs4569235	NOP10	cis	Muscle Skeletal	GTEx
rs4569235	NOP10	cis	Nerve Tibial	GTEx
rs4569235	NOP10	cis	Artery Tibial	GTEx
rs4569235	NOP10	cis	Esophagus Mucosa	GTEx
rs4569235	NOP10	cis	Skin Sun Exposed Lower leg	GTEx
rs4569235	SLC12A6	cis	Thyroid	GTEx
rs4569235	NOP10	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34629800-34633400	Weak transcription	Fetal Heart	heart
2	chr15:34630200-34633600	Weak transcription	Small Intestine	intestine
3	chr15:34630200-34634000	Weak transcription	Gastric	stomach
4	chr15:34630200-34634000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:34630200-34634000	Weak transcription	Spleen	Spleen
6	chr15:34630400-34634000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:34630600-34633400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:34630600-34633400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:34630600-34633400	Weak transcription	K562	blood
10	chr15:34630600-34633600	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:34630600-34633600	Weak transcription	Brain Substantia Nigra	brain
12	chr15:34630600-34633600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:34630600-34633600	Weak transcription	HSMMtube	muscle
14	chr15:34630600-34633800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:34630600-34633800	Weak transcription	Esophagus	oesophagus
16	chr15:34630600-34634000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:34630600-34634000	Weak transcription	Colonic Mucosa	Colon
18	chr15:34630600-34634000	Weak transcription	Fetal Kidney	kidney
19	chr15:34630600-34634000	Weak transcription	Ovary	ovary
20	chr15:34630600-34634000	Weak transcription	Right Atrium	heart
21	chr15:34630600-34634000	Weak transcription	Right Ventricle	heart
22	chr15:34630600-34634000	Weak transcription	Stomach Mucosa	stomach
23	chr15:34630600-34634200	Weak transcription	Aorta	Aorta
24	chr15:34630600-34635000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:34630800-34633400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:34630800-34633400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:34630800-34633400	Weak transcription	Adipose Nuclei	Adipose
28	chr15:34630800-34633400	Weak transcription	HepG2	liver
29	chr15:34630800-34633600	Weak transcription	Fetal Lung	lung
30	chr15:34630800-34633600	Weak transcription	NHLF	lung
31	chr15:34630800-34633800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:34630800-34633800	Weak transcription	Psoas Muscle	Psoas
33	chr15:34630800-34633800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:34630800-34633800	Weak transcription	Thymus	Thymus
35	chr15:34630800-34634000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:34630800-34634000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:34630800-34634000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:34630800-34634000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:34630800-34634000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:34630800-34634000	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:34630800-34634000	Weak transcription	Fetal Brain Male	brain
42	chr15:34630800-34634000	Weak transcription	Fetal Brain Female	brain
43	chr15:34630800-34634000	Weak transcription	Fetal Intestine Large	intestine
44	chr15:34630800-34634000	Weak transcription	Pancreas	Pancrea
45	chr15:34630800-34634000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:34630800-34634000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:34630800-34634200	Weak transcription	Brain Angular Gyrus	brain
48	chr15:34630800-34634200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:34630800-34634400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:34630800-34634400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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