Variant report

Variant	rs4571527
Chromosome Location	chr6:81350902-81350903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1077898	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2444815	0.81[EUR][1000 genomes]
rs2496690	0.85[ASN][1000 genomes]
rs2496691	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2496694	0.81[ASN][1000 genomes]
rs2503751	0.81[ASN][1000 genomes]
rs2503755	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3889467	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62424469	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs748215	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7743121	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352846	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886314	chr6:81341175-81379791	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3324409	chr6:81349858-81352406	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3328252	chr6:81350108-81352256	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81348800-81359800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:81349000-81352600	Weak transcription	Stomach Mucosa	stomach
3	chr6:81349200-81351400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:81349200-81351400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:81349200-81351400	Weak transcription	NHDF-Ad	bronchial
6	chr6:81349200-81351600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:81349200-81351600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:81349200-81351600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:81349200-81351600	Weak transcription	HSMM	muscle
10	chr6:81349400-81351400	Weak transcription	Osteobl	bone
11	chr6:81349600-81351400	Weak transcription	NHLF	lung
12	chr6:81349800-81353000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links