Variant report

Variant	rs4571660
Chromosome Location	chr7:147725461-147725462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147719801..147721661-chr7:147724450..147725973,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10250079	0.82[ASN][1000 genomes]
rs10253458	0.82[ASN][1000 genomes]
rs10264877	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10264997	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10272032	0.82[ASN][1000 genomes]
rs10280388	0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.83[ASN][1000 genomes]
rs10281082	0.94[CHB][hapmap]
rs10485848	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10952721	0.84[AMR][1000 genomes]
rs10952722	0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10952723	0.83[CHB][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.83[ASN][1000 genomes]
rs10952725	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10952726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10952727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11764815	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531913	0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[MEX][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12532338	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs12532341	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs12667149	0.83[CHB][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.83[ASN][1000 genomes]
rs12671605	0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12673714	0.82[ASN][1000 genomes]
rs12674206	0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12703988	0.83[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12703990	0.89[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12703991	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12703992	0.94[CHB][hapmap]
rs16882145	0.84[MEX][hapmap]
rs17546472	0.82[AMR][1000 genomes]
rs1990057	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[MEX][hapmap]
rs1990058	0.94[CHB][hapmap];0.97[CHD][hapmap]
rs2214680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2373314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2373316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2527047	0.94[CHB][hapmap];0.82[AMR][1000 genomes]
rs2527052	0.82[AMR][1000 genomes]
rs2527055	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2527058	0.94[CHB][hapmap]
rs2527059	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs2527060	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2527062	0.94[CHB][hapmap]
rs2527063	0.94[CHB][hapmap]
rs2527064	0.94[CHB][hapmap]
rs2527065	0.94[CHB][hapmap]
rs2527066	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2527068	0.94[CHB][hapmap]
rs2707558	0.94[CHB][hapmap];0.82[AMR][1000 genomes]
rs2707561	0.82[AMR][1000 genomes]
rs2707565	0.82[AMR][1000 genomes]
rs2707582	0.83[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs2707583	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[MEX][hapmap]
rs2710137	0.82[AMR][1000 genomes]
rs2710143	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2710144	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2710145	0.94[CHB][hapmap]
rs2710152	0.94[CHB][hapmap]
rs2888547	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4262258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725761	0.80[MEX][hapmap]
rs4726904	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4726905	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4726906	0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4726907	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4726913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726915	0.84[MEX][hapmap]
rs4726916	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6960266	0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6965599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979577	0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs757697	0.94[CHB][hapmap];0.81[AMR][1000 genomes]
rs757698	0.82[AMR][1000 genomes]
rs7797264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4571660	ZNF425	cis	parietal	SCAN
rs4571660	ZNF212	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147724200-147726200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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