Variant report

Variant	rs4571941
Chromosome Location	chr1:215280690-215280691
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215280557..215283652-chr1:215283955..215286310,3	MCF-7	breast:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10127521	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10127656	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10746454	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10746455	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10779639	0.96[ASN][1000 genomes]
rs10779640	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10779642	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10779643	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10779644	0.93[ASN][1000 genomes]
rs10779645	0.93[ASN][1000 genomes]
rs10779646	0.93[ASN][1000 genomes]
rs10779647	0.93[ASN][1000 genomes]
rs10779648	0.86[ASN][1000 genomes]
rs10779649	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10779650	0.80[ASN][1000 genomes]
rs10779651	0.80[ASN][1000 genomes]
rs10864150	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10864152	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10864153	0.98[ASN][1000 genomes]
rs10864154	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11120495	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11120496	0.94[ASN][1000 genomes]
rs11120497	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11120498	0.95[ASN][1000 genomes]
rs11120499	0.93[ASN][1000 genomes]
rs11120500	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11120506	0.93[ASN][1000 genomes]
rs11120508	0.93[ASN][1000 genomes]
rs11120511	0.93[ASN][1000 genomes]
rs11120513	0.93[ASN][1000 genomes]
rs11120516	0.93[ASN][1000 genomes]
rs11120517	0.89[ASN][1000 genomes]
rs1112101	0.85[AMR][1000 genomes]
rs12031308	0.93[ASN][1000 genomes]
rs12061916	0.95[ASN][1000 genomes]
rs12068734	0.93[ASN][1000 genomes]
rs12120091	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12121761	0.96[ASN][1000 genomes]
rs12135076	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12141874	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12143339	0.93[ASN][1000 genomes]
rs12410041	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12411068	0.81[ASN][1000 genomes]
rs12567520	0.82[ASN][1000 genomes]
rs12742137	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339405	0.89[ASN][1000 genomes]
rs1339406	0.89[ASN][1000 genomes]
rs1361340	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1416647	0.85[AMR][1000 genomes]
rs1578137	0.85[AMR][1000 genomes]
rs2363554	0.93[ASN][1000 genomes]
rs2363556	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2363557	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2363558	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2363559	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2363560	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2363564	0.98[ASN][1000 genomes]
rs2363565	0.93[ASN][1000 genomes]
rs2363566	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2363567	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2885812	0.93[ASN][1000 genomes]
rs2885813	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2885815	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3931584	0.92[ASN][1000 genomes]
rs4262516	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4269745	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4271184	0.82[ASN][1000 genomes]
rs4300189	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4303048	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4375232	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4394614	0.89[ASN][1000 genomes]
rs4411107	0.95[ASN][1000 genomes]
rs4428856	0.95[ASN][1000 genomes]
rs4440833	0.89[ASN][1000 genomes]
rs4497183	0.93[ASN][1000 genomes]
rs4509552	0.93[ASN][1000 genomes]
rs4509553	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4531266	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4548407	0.87[AMR][1000 genomes]
rs4556330	0.82[ASN][1000 genomes]
rs4573492	0.95[ASN][1000 genomes]
rs4607848	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4655276	0.93[ASN][1000 genomes]
rs4655277	0.80[ASN][1000 genomes]
rs4655278	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4655391	0.93[ASN][1000 genomes]
rs4655392	0.93[ASN][1000 genomes]
rs4655393	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4655395	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61818297	0.84[AMR][1000 genomes]
rs61818299	0.84[AMR][1000 genomes]
rs61818320	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61818328	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6657313	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6662353	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6666828	0.94[ASN][1000 genomes]
rs6667764	0.98[ASN][1000 genomes]
rs6672978	0.92[ASN][1000 genomes]
rs6675926	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6678758	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6683041	0.95[ASN][1000 genomes]
rs6684084	0.80[ASN][1000 genomes]
rs6688713	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6695967	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6696333	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72735359	0.81[ASN][1000 genomes]
rs7410928	0.82[AMR][1000 genomes]
rs7417100	0.93[ASN][1000 genomes]
rs7513709	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7516689	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7540029	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7541543	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7547655	0.96[AMR][1000 genomes]
rs7549136	0.95[ASN][1000 genomes]
rs7551415	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7555013	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7555727	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9793690	0.84[AMR][1000 genomes]
rs9793695	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215265400-215280800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:215278000-215285200	Weak transcription	NHDF-Ad	bronchial
3	chr1:215278000-215285400	Weak transcription	Osteobl	bone
4	chr1:215278200-215286600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:215279800-215281400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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