Variant report

Variant	rs457215
Chromosome Location	chr5:98030044-98030045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs149247	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs150822	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs152980	0.86[ASN][1000 genomes]
rs152981	0.90[ASN][1000 genomes]
rs152982	0.90[ASN][1000 genomes]
rs152983	0.89[ASN][1000 genomes]
rs152986	0.91[ASN][1000 genomes]
rs152987	0.91[ASN][1000 genomes]
rs152990	0.91[ASN][1000 genomes]
rs159162	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1592853	0.90[EUR][1000 genomes]
rs160710	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs160711	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs160713	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs160714	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs160716	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs160720	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs162675	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs176892	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs184143	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2112421	0.90[EUR][1000 genomes]
rs2545670	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2545692	0.89[EUR][1000 genomes]
rs2547957	0.90[EUR][1000 genomes]
rs2662244	0.85[EUR][1000 genomes]
rs294030	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs29671	0.91[ASN][1000 genomes]
rs316506	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316508	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316510	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs373070	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs384863	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs392132	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs403888	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs408005	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs408400	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs426515	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs439509	0.91[EUR][1000 genomes]
rs442074	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs455749	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs455800	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs456244	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs456367	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs458154	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs459865	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs460295	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs461258	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs461548	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs462719	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs463309	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs463872	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs464246	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs465003	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs465427	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67595117	0.89[EUR][1000 genomes]
rs981567	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98026000-98040000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links