Variant report

Variant	rs4573999
Chromosome Location	chr18:30812631-30812632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:30811344..30813026-chr18:31074938..31075918,10	MCF-7	breast:
2	chr18:30781366..30781999-chr18:30811866..30812737,2	MCF-7	breast:
3	chr18:30812158..30812660-chr18:31418821..31419622,2	MCF-7	breast:

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs11081796	0.84[ASN][1000 genomes]
rs11660410	0.96[EUR][1000 genomes]
rs12150734	0.85[ASN][1000 genomes]
rs12150736	0.85[ASN][1000 genomes]
rs12150837	0.85[ASN][1000 genomes]
rs1391025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482946	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs156186	0.93[EUR][1000 genomes]
rs156368	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs156369	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1600999	0.91[EUR][1000 genomes]
rs16964459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182105	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs190614	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs200432	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2626370	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs271434	0.91[EUR][1000 genomes]
rs271435	0.93[EUR][1000 genomes]
rs271436	0.93[EUR][1000 genomes]
rs271437	0.93[EUR][1000 genomes]
rs271438	0.93[EUR][1000 genomes]
rs271443	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271444	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271445	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271446	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271447	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271448	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271449	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271450	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271451	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271452	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271453	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271462	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271463	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271490	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271491	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs271492	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271493	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271494	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271495	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs271497	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271498	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271499	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271500	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271502	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271503	0.93[EUR][1000 genomes]
rs271526	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271527	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271528	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs271529	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs271530	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs271531	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271532	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271537	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271538	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271539	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271540	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs271559	0.93[EUR][1000 genomes]
rs271560	0.90[EUR][1000 genomes]
rs271561	0.93[EUR][1000 genomes]
rs271564	0.93[EUR][1000 genomes]
rs271565	0.93[EUR][1000 genomes]
rs271572	0.93[EUR][1000 genomes]
rs271573	0.93[EUR][1000 genomes]
rs271575	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs271577	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs271578	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs271579	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs271581	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs271582	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs271583	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs271585	1.00[CEU][hapmap]
rs28368446	0.89[ASN][1000 genomes]
rs28374541	0.85[ASN][1000 genomes]
rs28375135	0.85[ASN][1000 genomes]
rs28394340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28457646	0.85[ASN][1000 genomes]
rs28521216	0.81[ASN][1000 genomes]
rs28633937	0.85[ASN][1000 genomes]
rs402801	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs418480	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4319841	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4383225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4432316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4455039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4494628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505412	0.84[ASN][1000 genomes]
rs457802	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs458002	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4600534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630625	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4633796	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs463489	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs466500	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs466881	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56168034	0.98[ASN][1000 genomes]
rs56675518	0.85[ASN][1000 genomes]
rs56959895	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57082165	0.84[ASN][1000 genomes]
rs57204429	0.98[ASN][1000 genomes]
rs57358360	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58448816	0.85[ASN][1000 genomes]
rs59342170	0.85[ASN][1000 genomes]
rs66481582	0.85[ASN][1000 genomes]
rs66560059	0.85[ASN][1000 genomes]
rs66714151	0.85[ASN][1000 genomes]
rs67134528	0.85[ASN][1000 genomes]
rs67274971	0.85[ASN][1000 genomes]
rs67373469	0.84[ASN][1000 genomes]
rs67560478	0.85[ASN][1000 genomes]
rs67772507	0.98[ASN][1000 genomes]
rs67783924	0.85[ASN][1000 genomes]
rs67881407	0.98[ASN][1000 genomes]
rs68068381	0.85[ASN][1000 genomes]
rs68190773	0.98[ASN][1000 genomes]
rs72947170	0.87[ASN][1000 genomes]
rs72947172	0.89[ASN][1000 genomes]
rs72947174	0.89[ASN][1000 genomes]
rs72948837	0.82[ASN][1000 genomes]
rs72948842	0.82[ASN][1000 genomes]
rs72949130	0.98[ASN][1000 genomes]
rs72951055	0.85[ASN][1000 genomes]
rs72951085	0.85[ASN][1000 genomes]
rs7351024	0.85[ASN][1000 genomes]
rs7351029	0.85[ASN][1000 genomes]
rs8085979	0.88[EUR][1000 genomes]
rs968668	0.96[EUR][1000 genomes]
rs9951961	0.85[ASN][1000 genomes]
rs9952144	0.85[ASN][1000 genomes]
rs9953737	0.98[ASN][1000 genomes]
rs9962637	0.85[ASN][1000 genomes]
rs9962832	0.85[ASN][1000 genomes]
rs9962884	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2753661	chr18:30769502-30854602	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30812200-30813200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links