Variant report

Variant	rs4574353
Chromosome Location	chr4:144108641-144108642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr4:144105116-144110169	IMR90	lung:	n/a	n/a
2	POLR2A	chr4:144108603-144108828	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:142249413..142251647-chr4:144107671..144110425,2	K562	blood:
2	chr4:144106103..144107947-chr4:144108147..144109920,2	MCF-7	breast:
3	chr4:144108221..144110479-chr4:144114263..144116156,2	K562	blood:
4	chr4:144108579..144111987-chr4:144116540..144118899,3	K562	blood:

Variant related genes	Relation type
ENSG00000250326	TF binding region
ENSG00000170185	Chromatin interaction

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs10000911	0.92[ASN][1000 genomes]
rs10001113	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10002867	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10002888	0.92[ASN][1000 genomes]
rs10004364	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10004598	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10009906	0.92[ASN][1000 genomes]
rs10010367	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10011709	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10012434	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10015190	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10015751	0.92[ASN][1000 genomes]
rs10019249	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10026015	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10028434	0.87[ASN][1000 genomes]
rs10029373	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10031363	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10033104	0.92[ASN][1000 genomes]
rs10034769	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10155434	0.92[ASN][1000 genomes]
rs1039762	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1039763	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10434185	0.92[ASN][1000 genomes]
rs10519678	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857405	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11100770	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11100771	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11100772	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11100778	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100779	0.85[ASN][1000 genomes]
rs11100780	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11100781	0.92[ASN][1000 genomes]
rs11100782	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100783	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11724872	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11725565	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11727441	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11728962	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11732484	0.92[ASN][1000 genomes]
rs11737209	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11933603	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11940580	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11943957	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11947142	0.91[ASN][1000 genomes]
rs12499485	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501994	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12505142	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12506120	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12640698	0.89[ASN][1000 genomes]
rs12649219	0.92[ASN][1000 genomes]
rs13102238	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13106497	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13113047	0.92[ASN][1000 genomes]
rs13114280	0.87[ASN][1000 genomes]
rs13116414	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118943	0.92[ASN][1000 genomes]
rs13119330	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13128884	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13137565	0.89[ASN][1000 genomes]
rs13138084	0.92[ASN][1000 genomes]
rs13139457	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13140643	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13151561	0.92[ASN][1000 genomes]
rs1440410	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440411	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1440412	0.91[ASN][1000 genomes]
rs1440414	0.92[ASN][1000 genomes]
rs1440416	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1440418	0.92[ASN][1000 genomes]
rs1440419	0.92[ASN][1000 genomes]
rs1470130	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1605581	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2010767	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119269	0.87[ASN][1000 genomes]
rs2165301	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165302	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2323076	0.92[ASN][1000 genomes]
rs2323077	0.92[ASN][1000 genomes]
rs28470858	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28592151	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28649839	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs300921	0.91[ASN][1000 genomes]
rs300924	0.91[ASN][1000 genomes]
rs300925	0.91[ASN][1000 genomes]
rs300927	0.85[ASN][1000 genomes]
rs300929	0.85[ASN][1000 genomes]
rs300934	0.92[ASN][1000 genomes]
rs300938	0.92[ASN][1000 genomes]
rs300939	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs300940	0.92[ASN][1000 genomes]
rs300941	0.92[ASN][1000 genomes]
rs34168479	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34342939	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34664017	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3910622	0.92[ASN][1000 genomes]
rs4131029	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132266	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4234886	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4234887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4285045	0.92[ASN][1000 genomes]
rs4290853	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4312712	0.87[EUR][1000 genomes]
rs4318600	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4323054	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4323055	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4336176	0.84[ASN][1000 genomes]
rs4407450	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413361	0.92[ASN][1000 genomes]
rs4502634	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4511955	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4513514	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4563450	0.84[EUR][1000 genomes]
rs4566607	0.84[ASN][1000 genomes]
rs4582112	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4626148	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4637346	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690715	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690771	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4690774	0.84[ASN][1000 genomes]
rs4690775	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690778	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690779	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690780	0.92[ASN][1000 genomes]
rs4690781	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690783	0.84[ASN][1000 genomes]
rs534750	0.92[ASN][1000 genomes]
rs57168887	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587254	0.92[ASN][1000 genomes]
rs62330278	0.80[AMR][1000 genomes]
rs62330280	0.87[ASN][1000 genomes]
rs632359	0.92[ASN][1000 genomes]
rs6537150	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6537151	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6812522	0.89[ASN][1000 genomes]
rs6816223	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6818149	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820538	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6822299	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6826771	0.92[ASN][1000 genomes]
rs6827229	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6828369	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829621	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6832943	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6833582	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6837133	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6839312	0.92[ASN][1000 genomes]
rs6845478	0.92[ASN][1000 genomes]
rs6845907	0.92[ASN][1000 genomes]
rs6848475	0.92[ASN][1000 genomes]
rs6854861	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6856785	0.92[ASN][1000 genomes]
rs72719159	0.84[ASN][1000 genomes]
rs72719160	0.84[ASN][1000 genomes]
rs72719163	0.84[ASN][1000 genomes]
rs72719173	0.83[ASN][1000 genomes]
rs72719179	0.84[ASN][1000 genomes]
rs72719180	0.84[ASN][1000 genomes]
rs7435424	0.92[ASN][1000 genomes]
rs7436840	0.92[ASN][1000 genomes]
rs763918	0.87[ASN][1000 genomes]
rs7656276	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7670439	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7673827	0.92[ASN][1000 genomes]
rs7680365	0.89[ASN][1000 genomes]
rs7685075	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7685461	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7687417	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7692813	0.89[ASN][1000 genomes]
rs7693583	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7693817	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9308169	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9631769	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9685571	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9790396	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9790822	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs985619	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992676	0.92[ASN][1000 genomes]
rs9996072	0.92[ASN][1000 genomes]
rs9998017	0.89[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144104400-144109800	Active TSS	K562	blood
2	chr4:144104600-144109000	Active TSS	Duodenum Mucosa	Duodenum
3	chr4:144104600-144109600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr4:144104800-144108800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:144104800-144108800	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr4:144104800-144109000	Active TSS	Psoas Muscle	Psoas
7	chr4:144104800-144109200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr4:144104800-144109600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:144104800-144109600	Active TSS	Fetal Intestine Large	intestine
10	chr4:144104800-144110800	Active TSS	Right Ventricle	heart
11	chr4:144104800-144111000	Active TSS	NHLF	lung
12	chr4:144105000-144108800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr4:144105000-144108800	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr4:144105000-144108800	Active TSS	HMEC	breast
15	chr4:144105000-144109800	Active TSS	NHDF-Ad	bronchial
16	chr4:144105000-144110000	Active TSS	Colonic Mucosa	Colon
17	chr4:144105000-144110400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:144105000-144110400	Active TSS	Fetal Intestine Small	intestine
19	chr4:144105000-144110400	Active TSS	Right Atrium	heart
20	chr4:144105000-144111000	Active TSS	GM12878-XiMat	blood
21	chr4:144105200-144108800	Active TSS	Brain Hippocampus Middle	brain
22	chr4:144105200-144108800	Active TSS	HSMM	muscle
23	chr4:144105200-144108800	Active TSS	NHEK	skin
24	chr4:144105200-144109000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:144105200-144109000	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr4:144105200-144109000	Active TSS	Fetal Stomach	stomach
27	chr4:144105200-144109200	Active TSS	H1 Cell Line	embryonic stem cell
28	chr4:144105200-144109200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:144105200-144109200	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr4:144105200-144109200	Active TSS	Ovary	ovary
31	chr4:144105200-144109400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:144105200-144109600	Active TSS	A549	lung
33	chr4:144105200-144109800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:144105200-144109800	Active TSS	Aorta	Aorta
35	chr4:144105200-144110000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:144105400-144108800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr4:144105400-144108800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:144105400-144108800	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr4:144105400-144108800	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr4:144105400-144108800	Active TSS	Hela-S3	cervix
41	chr4:144105400-144109000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:144105400-144109000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:144105400-144109000	Active TSS	Muscle Satellite Cultured Cells	--
44	chr4:144105400-144109400	Active TSS	Fetal Kidney	kidney
45	chr4:144105400-144109600	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr4:144105400-144109800	Active TSS	Thymus	Thymus
47	chr4:144105400-144109800	Active TSS	HSMMtube	muscle
48	chr4:144105400-144110800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:144105600-144109400	Active TSS	Osteobl	bone
50	chr4:144105600-144109600	Active TSS	NH-A	brain

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