Variant report

Variant	rs4575830
Chromosome Location	chr3:34963203-34963204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34962614..34964399-chr3:35000866..35002523,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11925888	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12053892	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12632359	0.82[ASN][1000 genomes]
rs1357428	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1474299	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17032340	0.89[ASN][1000 genomes]
rs17032385	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071488	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4549234	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678716	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678717	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4678724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56235912	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58778451	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59750319	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62260224	0.98[ASN][1000 genomes]
rs6550306	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6792813	0.89[ASN][1000 genomes]
rs73061969	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73063843	0.96[ASN][1000 genomes]
rs73063864	0.87[ASN][1000 genomes]
rs7625986	0.82[ASN][1000 genomes]
rs7653203	0.87[ASN][1000 genomes]
rs940047	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4575830	SLC22A14	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34962400-34963400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:34963000-34965000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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