Variant report

Variant	rs4585534
Chromosome Location	chr6:166634610-166634611
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4591822	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57777795	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7740910	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7772991	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7773571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457146	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166633000-166636400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:166634200-166635000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr6:166634200-166636600	ZNF genes & repeats	Fetal Thymus	thymus
4	chr6:166634400-166634800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:166634400-166634800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:166634400-166634800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:166634400-166635000	Enhancers	Primary T cells from cord blood	blood
8	chr6:166634400-166635000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:166634600-166634800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr6:166634600-166634800	Flanking Active TSS	Dnd41	blood
11	chr6:166634600-166635400	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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