Variant report

Variant	rs4585682
Chromosome Location	chr7:105215970-105215971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105172788..105175282-chr7:105215933..105219450,4	K562	blood:
2	chr7:105213718..105216796-chr7:105221766..105223512,3	K562	blood:
3	chr7:105189739..105192381-chr7:105213773..105216738,2	K562	blood:
4	chr7:105213718..105216186-chr7:105221766..105223453,2	K562	blood:

Variant related genes	Relation type
ENSG00000135249	Chromatin interaction
ENSG00000185055	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12538052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12540022	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs1706915	0.82[CHB][hapmap]
rs1728646	1.00[CEU][hapmap]
rs2463632	0.84[EUR][1000 genomes]
rs3735368	0.81[CHB][hapmap];0.95[CHD][hapmap]
rs55807006	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62486981	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62486982	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62486983	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62486984	0.84[ASN][1000 genomes]
rs62486989	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62486990	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62486991	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62486992	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62486993	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62486996	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62486997	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62486998	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62487001	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6958252	0.89[CHD][hapmap]
rs6971072	0.81[CHB][hapmap];0.89[CHD][hapmap]
rs711435	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7790660	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7790913	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7801900	0.86[MEX][hapmap];1.00[YRI][hapmap]
rs818470	1.00[CEU][hapmap]
rs818479	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9641352	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105193200-105221400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:105193200-105221600	Weak transcription	Aorta	Aorta
3	chr7:105196000-105221600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:105199400-105221600	Weak transcription	Pancreas	Pancrea
5	chr7:105201000-105217600	Weak transcription	HSMMtube	muscle
6	chr7:105201000-105221600	Weak transcription	Colonic Mucosa	Colon
7	chr7:105202000-105221600	Weak transcription	Esophagus	oesophagus
8	chr7:105205400-105221400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:105205600-105221600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:105206200-105221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:105206200-105221600	Weak transcription	HUVEC	blood vessel
12	chr7:105206400-105218200	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:105206400-105221400	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:105206400-105221600	Weak transcription	Fetal Kidney	kidney
15	chr7:105206600-105218200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:105207000-105221400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:105207000-105221400	Weak transcription	Fetal Brain Female	brain
18	chr7:105207000-105221800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr7:105208200-105221600	Weak transcription	HepG2	liver
20	chr7:105208400-105221400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:105208400-105221600	Weak transcription	NHDF-Ad	bronchial
22	chr7:105208600-105217600	Weak transcription	Fetal Lung	lung
23	chr7:105208600-105218800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:105208600-105219600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:105208600-105221200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:105208600-105221400	Weak transcription	Brain Germinal Matrix	brain
27	chr7:105208600-105221400	Weak transcription	NH-A	brain
28	chr7:105208600-105221600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:105208600-105221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:105208600-105221600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr7:105208600-105221600	Weak transcription	Right Ventricle	heart
32	chr7:105208800-105216400	Weak transcription	Ovary	ovary
33	chr7:105208800-105220600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:105209200-105221400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:105209200-105221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:105209200-105221600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:105209200-105221600	Weak transcription	NHLF	lung
38	chr7:105209400-105220800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:105209400-105221600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr7:105209400-105221600	Weak transcription	Left Ventricle	heart
41	chr7:105209600-105217600	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:105209600-105221600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr7:105209600-105221600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr7:105209600-105221600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr7:105209600-105221600	Weak transcription	Thymus	Thymus
46	chr7:105210000-105221400	Weak transcription	Brain Anterior Caudate	brain
47	chr7:105210000-105221400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:105210000-105221600	Weak transcription	Primary B cells from cord blood	blood
49	chr7:105210000-105221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:105210200-105216000	Weak transcription	K562	blood

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