Variant report

Variant	rs4587112
Chromosome Location	chr5:116730051-116730052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10075994	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1030462	0.92[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11241424	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13164082	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13183369	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13358449	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13358452	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1428048	0.80[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2007303	0.84[ASN][1000 genomes]
rs2560593	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2560595	0.82[ASN][1000 genomes]
rs2560598	0.80[ASN][1000 genomes]
rs2624459	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2624462	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2624482	0.80[ASN][1000 genomes]
rs2900102	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4455596	0.87[CHB][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4481381	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4920870	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4920871	0.82[EUR][1000 genomes]
rs4920965	0.82[EUR][1000 genomes]
rs6875942	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7714703	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7732741	0.83[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs950073	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs950074	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116729800-116730600	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr5:116730000-116730600	Enhancers	Colon Smooth Muscle	Colon
3	chr5:116730000-116731200	Enhancers	Rectal Mucosa Donor 31	rectum

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