Variant report

Variant	rs4587536
Chromosome Location	chr1:225067413-225067414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225066484..225067986-chr1:225113709..225116590,2	K562	blood:

Extended variants
information (count: 151 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10495228	0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10495229	0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10495230	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12097622	0.93[EUR][1000 genomes]
rs12561993	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12562917	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12563033	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12563857	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12563866	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12564683	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12564768	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12564776	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12565019	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12565073	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12565439	0.92[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12565833	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12566396	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12566857	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12566886	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12567069	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12567082	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12567091	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12567334	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12567461	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12567470	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12567499	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12567812	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12568142	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1316512	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1361923	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1482279	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs1482280	0.92[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1506070	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1587980	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1600865	0.91[ASN][1000 genomes]
rs16856396	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16856435	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16856463	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16856829	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16857787	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16858145	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16858216	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16858299	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16858661	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16858758	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16858766	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16858829	0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16858831	0.93[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16858932	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16858962	0.86[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1806563	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1892121	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1905113	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1905114	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs1905115	0.85[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1905117	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1936629	0.91[ASN][1000 genomes]
rs1936632	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1961688	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1982707	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2101143	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2128267	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2252950	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2291227	0.91[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2298257	0.90[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2406098	0.90[ASN][1000 genomes]
rs2449257	0.86[ASN][1000 genomes]
rs2449259	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2449260	0.86[ASN][1000 genomes]
rs2449273	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2449274	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2449276	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2449280	0.85[ASN][1000 genomes]
rs2449292	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2449311	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2449313	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2449316	0.90[ASN][1000 genomes]
rs2456335	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2456339	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2456340	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2489300	0.88[ASN][1000 genomes]
rs2489302	0.89[ASN][1000 genomes]
rs2489303	0.82[ASN][1000 genomes]
rs2489310	0.91[ASN][1000 genomes]
rs2489322	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2489328	0.86[ASN][1000 genomes]
rs2489330	0.86[ASN][1000 genomes]
rs2489332	0.81[ASN][1000 genomes]
rs2489341	0.86[ASN][1000 genomes]
rs2489344	0.86[ASN][1000 genomes]
rs2501061	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs2501064	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2501066	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2501068	0.88[ASN][1000 genomes]
rs2501072	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2501073	0.86[ASN][1000 genomes]
rs2501078	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2501081	0.92[ASN][1000 genomes]
rs2501107	0.86[JPT][hapmap]
rs2501108	0.86[JPT][hapmap]
rs2501114	0.93[JPT][hapmap]
rs2501125	0.84[ASN][1000 genomes]
rs2501127	0.81[ASN][1000 genomes]
rs2501129	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2501130	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2501134	0.86[ASN][1000 genomes]
rs2501135	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2501140	0.88[ASN][1000 genomes]
rs2501141	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2501143	0.86[ASN][1000 genomes]
rs2501153	0.88[ASN][1000 genomes]
rs2501156	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2662929	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2800234	0.90[ASN][1000 genomes]
rs2802556	0.82[AFR][1000 genomes]
rs2802568	0.96[EUR][1000 genomes]
rs2802732	0.96[EUR][1000 genomes]
rs2802733	0.95[EUR][1000 genomes]
rs2802744	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2997478	0.85[EUR][1000 genomes]
rs2997501	0.83[EUR][1000 genomes]
rs3012182	0.89[CEU][hapmap]
rs3105558	0.86[JPT][hapmap]
rs4379650	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55635719	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55668169	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55752315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55752383	0.83[ASN][1000 genomes]
rs55754430	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55761817	0.84[ASN][1000 genomes]
rs55785201	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55786647	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55876129	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55962425	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56088704	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56152573	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56203783	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56237431	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56251723	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56275175	0.83[ASN][1000 genomes]
rs56337810	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57889280	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61466304	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61540517	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6677680	0.84[ASN][1000 genomes]
rs6697156	0.93[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs729398	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7523949	0.86[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7531542	0.82[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs981067	0.86[JPT][hapmap]
rs981068	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4587536	DNAH14	cis	Thyroid	GTEx

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225061200-225068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:225063000-225071600	Weak transcription	Ovary	ovary
3	chr1:225063600-225069800	Weak transcription	Liver	Liver
4	chr1:225064000-225067800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:225064000-225069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:225066200-225068600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:225066400-225067800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:225066400-225068200	Enhancers	HSMM	muscle
9	chr1:225066400-225068600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:225066400-225069200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:225066400-225070600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:225066600-225068800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:225066600-225068800	Enhancers	HSMMtube	muscle
14	chr1:225066800-225067600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:225066800-225067600	Enhancers	Osteobl	bone
16	chr1:225066800-225067800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:225066800-225068800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:225066800-225069600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:225067000-225067800	Bivalent Enhancer	NHDF-Ad	bronchial
20	chr1:225067000-225068000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:225067000-225068200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr1:225067000-225068200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:225067000-225069200	Enhancers	Fetal Intestine Small	intestine
24	chr1:225067000-225069800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr1:225067000-225073000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:225067200-225067600	Enhancers	Brain Angular Gyrus	brain
27	chr1:225067200-225067800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr1:225067200-225067800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:225067200-225067800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:225067200-225067800	Enhancers	Brain Hippocampus Middle	brain
31	chr1:225067200-225068000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr1:225067200-225068000	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr1:225067200-225068000	Bivalent Enhancer	Fetal Kidney	kidney
34	chr1:225067200-225068400	Enhancers	HepG2	liver
35	chr1:225067200-225068600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:225067200-225068800	Enhancers	A549	lung
37	chr1:225067200-225070000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr1:225067200-225070000	Enhancers	H9 Cell Line	embryonic stem cell
39	chr1:225067400-225068600	Weak transcription	Fetal Lung	lung
40	chr1:225067400-225071800	Weak transcription	Rectal Smooth Muscle	rectum

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