Variant report

Variant	rs4597474
Chromosome Location	chr2:182622627-182622628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10497586	0.98[ASN][1000 genomes]
rs12612058	0.82[ASN][1000 genomes]
rs12618902	0.94[ASN][1000 genomes]
rs12620901	0.86[CHB][hapmap]
rs13387144	0.80[ASN][1000 genomes]
rs13396043	0.88[ASN][1000 genomes]
rs1528028	0.94[ASN][1000 genomes]
rs16867494	0.93[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs16867495	0.87[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs16867496	0.91[ASN][1000 genomes]
rs57281910	0.94[ASN][1000 genomes]
rs57971040	0.82[ASN][1000 genomes]
rs59159077	0.94[ASN][1000 genomes]
rs60200067	0.94[ASN][1000 genomes]
rs6720578	0.80[ASN][1000 genomes]
rs7567399	0.80[ASN][1000 genomes]
rs7567560	0.80[ASN][1000 genomes]
rs7581484	0.80[ASN][1000 genomes]
rs7584725	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182616800-182631000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:182617600-182625000	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:182619200-182625000	Weak transcription	Brain Substantia Nigra	brain
4	chr2:182619400-182625200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:182619800-182624800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:182619800-182629000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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