Variant report

Variant	rs4598984
Chromosome Location	chr18:28841397-28841398
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs11659665	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11660638	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11661048	0.82[AMR][1000 genomes]
rs11661104	0.82[AMR][1000 genomes]
rs11663924	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11664596	0.90[EUR][1000 genomes]
rs11873223	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11873281	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11876962	0.82[AMR][1000 genomes]
rs12606446	0.83[EUR][1000 genomes]
rs12606722	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12957659	0.88[EUR][1000 genomes]
rs12958069	0.88[EUR][1000 genomes]
rs12958073	0.88[EUR][1000 genomes]
rs12958351	0.89[EUR][1000 genomes]
rs12958377	0.81[EUR][1000 genomes]
rs12959058	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12964422	0.88[EUR][1000 genomes]
rs12964443	0.88[EUR][1000 genomes]
rs12964744	0.87[EUR][1000 genomes]
rs12964748	0.87[EUR][1000 genomes]
rs12964839	0.88[EUR][1000 genomes]
rs12964907	0.88[EUR][1000 genomes]
rs12965148	0.87[EUR][1000 genomes]
rs12965177	0.88[EUR][1000 genomes]
rs12965803	0.88[EUR][1000 genomes]
rs12965829	0.87[EUR][1000 genomes]
rs1544880	0.85[EUR][1000 genomes]
rs17658464	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2042720	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2162274	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28372393	0.90[EUR][1000 genomes]
rs28510667	0.90[EUR][1000 genomes]
rs28615832	0.90[EUR][1000 genomes]
rs28633353	0.90[EUR][1000 genomes]
rs34187983	0.89[EUR][1000 genomes]
rs34212801	0.89[EUR][1000 genomes]
rs34301793	0.88[EUR][1000 genomes]
rs34530511	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34634416	0.89[EUR][1000 genomes]
rs34664857	0.90[EUR][1000 genomes]
rs34743470	0.88[EUR][1000 genomes]
rs35136508	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35220971	0.89[EUR][1000 genomes]
rs35223713	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35229932	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35257713	0.89[EUR][1000 genomes]
rs35287825	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35362621	0.90[EUR][1000 genomes]
rs35596545	0.89[EUR][1000 genomes]
rs35909227	0.89[EUR][1000 genomes]
rs4349226	0.84[EUR][1000 genomes]
rs4408611	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4517864	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4539673	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55776955	0.90[EUR][1000 genomes]
rs55778425	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55965644	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56088904	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56308568	0.90[EUR][1000 genomes]
rs62087700	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087701	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62087702	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62087703	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62088665	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62088675	0.82[AMR][1000 genomes]
rs62090401	0.89[EUR][1000 genomes]
rs6506903	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6506904	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67014182	0.90[EUR][1000 genomes]
rs67550130	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7226461	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7227412	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7229763	0.82[AMR][1000 genomes]
rs7229799	0.82[AMR][1000 genomes]
rs7230092	0.82[AMR][1000 genomes]
rs7230461	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7231460	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7231775	0.82[AMR][1000 genomes]
rs7232206	0.88[EUR][1000 genomes]
rs7233386	0.83[ASN][1000 genomes]
rs7235384	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7239695	0.90[EUR][1000 genomes]
rs7240897	0.90[EUR][1000 genomes]
rs7241874	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7242742	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7243151	0.90[EUR][1000 genomes]
rs7243262	0.89[EUR][1000 genomes]
rs7243638	0.90[EUR][1000 genomes]
rs7243885	0.88[EUR][1000 genomes]
rs7243922	0.88[EUR][1000 genomes]
rs7243984	0.87[EUR][1000 genomes]
rs7244015	0.90[EUR][1000 genomes]
rs7244050	0.88[EUR][1000 genomes]
rs7244153	0.88[EUR][1000 genomes]
rs7244510	0.89[EUR][1000 genomes]
rs7244719	0.82[AMR][1000 genomes]
rs7245008	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7245063	0.82[AMR][1000 genomes]
rs72914749	0.90[EUR][1000 genomes]
rs8087103	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8087786	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8088637	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8088973	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8089598	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8089762	0.89[EUR][1000 genomes]
rs8091715	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8091871	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs966376	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9946611	0.90[EUR][1000 genomes]
rs9950769	0.90[EUR][1000 genomes]
rs9950949	0.90[EUR][1000 genomes]
rs9950971	0.90[EUR][1000 genomes]
rs9951016	0.90[EUR][1000 genomes]
rs9951341	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9953981	0.82[AMR][1000 genomes]
rs9954315	0.82[AMR][1000 genomes]
rs9955239	0.82[AMR][1000 genomes]
rs9957758	0.90[EUR][1000 genomes]
rs9963626	0.90[EUR][1000 genomes]
rs9966267	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28827000-28841400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:28828000-28841400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr18:28835600-28841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:28837200-28841600	Weak transcription	NHEK	skin
5	chr18:28837200-28845400	Weak transcription	Liver	Liver
6	chr18:28838600-28841400	Weak transcription	Fetal Intestine Small	intestine
7	chr18:28840200-28842000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr18:28840400-28842000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr18:28840600-28841400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:28840600-28842200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:28840600-28842800	Weak transcription	Stomach Mucosa	stomach
12	chr18:28840800-28841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr18:28841000-28841400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr18:28841000-28841400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr18:28841000-28841600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:28841200-28842000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:28841200-28842200	Enhancers	GM12878-XiMat	blood

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