Variant report

Variant	rs4599560
Chromosome Location	chr5:97898348-97898349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11241997	0.82[ASN][1000 genomes]
rs11242002	0.83[ASN][1000 genomes]
rs11738266	0.81[ASN][1000 genomes]
rs13152846	0.82[ASN][1000 genomes]
rs13166309	0.82[ASN][1000 genomes]
rs13166458	0.82[ASN][1000 genomes]
rs13173747	0.82[ASN][1000 genomes]
rs13173749	0.82[ASN][1000 genomes]
rs1550808	0.81[ASN][1000 genomes]
rs1550809	0.81[ASN][1000 genomes]
rs4702992	0.82[ASN][1000 genomes]
rs62369077	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3401686	chr5:97881101-97900528	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97893000-97905200	Weak transcription	NHLF	lung
2	chr5:97896400-97899200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97897400-97902800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:97898000-97899400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:97898000-97899600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:97898200-97898400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:97898200-97898800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:97898200-97899000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr5:97898200-97899400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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