Variant report

Variant	rs4604823
Chromosome Location	chr10:52555442-52555443
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10994484	1.00[AMR][1000 genomes]
rs10994486	1.00[AMR][1000 genomes]
rs10994652	1.00[AMR][1000 genomes]
rs12241999	1.00[AMR][1000 genomes]
rs12242265	1.00[AMR][1000 genomes]
rs12245610	1.00[AMR][1000 genomes]
rs12246868	1.00[AMR][1000 genomes]
rs12247876	1.00[AMR][1000 genomes]
rs12248117	1.00[AMR][1000 genomes]
rs12248603	1.00[AMR][1000 genomes]
rs12250671	1.00[AMR][1000 genomes]
rs12250710	1.00[AMR][1000 genomes]
rs12251965	1.00[AMR][1000 genomes]
rs12252902	1.00[AMR][1000 genomes]
rs12255568	1.00[AMR][1000 genomes]
rs12256013	1.00[AMR][1000 genomes]
rs12257587	1.00[AMR][1000 genomes]
rs12258558	1.00[AMR][1000 genomes]
rs12261175	1.00[AMR][1000 genomes]
rs12262186	1.00[AMR][1000 genomes]
rs12263224	1.00[AMR][1000 genomes]
rs12266425	1.00[AMR][1000 genomes]
rs12268784	1.00[AMR][1000 genomes]
rs12268905	1.00[AMR][1000 genomes]
rs16909340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7077103	1.00[AMR][1000 genomes]
rs7078064	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082887	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094591	1.00[AMR][1000 genomes]
rs7099856	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52549600-52562800	Weak transcription	Liver	Liver
2	chr10:52555200-52575800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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