Variant report

Variant	rs4605897
Chromosome Location	chr6:150828616-150828617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11961060	0.87[AMR][1000 genomes]
rs4131416	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4131417	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4276514	0.82[AMR][1000 genomes]
rs4333428	0.87[AMR][1000 genomes]
rs4482992	0.84[AMR][1000 genomes]
rs62432560	0.82[AMR][1000 genomes]
rs62432561	0.84[AMR][1000 genomes]
rs6918187	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6919129	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7453224	0.87[AMR][1000 genomes]
rs7749721	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7775952	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9322263	0.85[AMR][1000 genomes]
rs9383830	0.82[AMR][1000 genomes]
rs9398011	0.83[AMR][1000 genomes]
rs9398014	0.82[AMR][1000 genomes]
rs9480469	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9480470	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9480471	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9480472	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150825000-150830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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