Variant report
Variant | rs4610739 |
---|---|
Chromosome Location | chr8:63728277-63728278 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1351347 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1351351 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1471511 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1471512 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1585871 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1600538 | 0.82[EUR][1000 genomes] |
rs16918940 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs16929506 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs16929512 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16929515 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16929516 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16929517 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16929568 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs16929587 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2170112 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2352717 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3943271 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4339640 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4739002 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs4739003 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4739004 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4739008 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs56946009 | 0.83[ASN][1000 genomes] |
rs57259426 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs62509400 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs62509401 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs62512374 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs62512420 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs62512421 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6996757 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7003189 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs7005977 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7836787 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7836794 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs931130 | 0.80[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | nsv831341 | chr8:63658694-63852213 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
4 | nsv521804 | chr8:63705238-63758070 | Active TSS Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv890961 | chr8:63708519-63773787 | Weak transcription Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv890962 | chr8:63708519-63812686 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | esv3342180 | chr8:63709447-63734873 | Active TSS Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
8 | esv3341182 | chr8:63712447-63734873 | Weak transcription Enhancers ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
9 | esv2761432 | chr8:63718878-63732350 | Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:63726800-63731400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |