Variant report

Variant	rs4614587
Chromosome Location	chr13:96136901-96136902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10219866	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11617639	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11619150	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12872431	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12876913	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1570903	0.83[EUR][1000 genomes]
rs1570904	0.83[EUR][1000 genomes]
rs1890373	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4466958	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4505187	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4547209	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4564445	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4564446	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4609701	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4773910	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4773911	0.83[EUR][1000 genomes]
rs6492792	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6492796	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6492797	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7322391	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7326265	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7326546	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7328468	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7332917	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7338647	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7982486	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7984234	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8002444	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs877960	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs877961	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs877962	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9302074	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs946231	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9516589	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516590	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9524982	0.83[EUR][1000 genomes]
rs9524983	0.83[EUR][1000 genomes]
rs9524986	0.83[EUR][1000 genomes]
rs9524987	0.80[EUR][1000 genomes]
rs9524988	0.81[EUR][1000 genomes]
rs9590285	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9590286	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96127800-96144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:96131200-96137200	Weak transcription	Aorta	Aorta
3	chr13:96131200-96137200	Weak transcription	Right Atrium	heart
4	chr13:96133600-96137200	Weak transcription	Spleen	Spleen
5	chr13:96133600-96137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:96133800-96137200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:96133800-96137200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:96133800-96137200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:96133800-96137200	Weak transcription	HUVEC	blood vessel
10	chr13:96134000-96137200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:96134000-96137200	Weak transcription	HMEC	breast
12	chr13:96134000-96137400	Weak transcription	Osteobl	bone
13	chr13:96134200-96137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:96134200-96137400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:96134400-96137400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:96135800-96138600	Enhancers	Pancreas	Pancrea
17	chr13:96136200-96137400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr13:96136400-96137800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:96136600-96137000	Weak transcription	K562	blood

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