Variant report

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs4129937	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4131857	0.90[EUR][1000 genomes]
rs4132045	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4715065	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715068	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715069	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907651	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6912487	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6936052	0.94[EUR][1000 genomes]
rs73366282	0.87[ASN][1000 genomes]
rs7775901	0.81[EUR][1000 genomes]
rs9349439	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9349440	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367308	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369762	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381635	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9381638	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9395336	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13027200-13037400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:13027600-13038000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:13027800-13039000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:13028000-13034800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:13029800-13036400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:13029800-13037200	Weak transcription	Left Ventricle	heart
7	chr6:13029800-13037400	Weak transcription	Right Ventricle	heart
8	chr6:13029800-13044600	Weak transcription	Lung	lung
9	chr6:13029800-13056400	Weak transcription	Pancreas	Pancrea
10	chr6:13030000-13056400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:13030200-13036800	Weak transcription	Aorta	Aorta
12	chr6:13031400-13038800	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:13032800-13036200	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:13033600-13037800	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:13033800-13038600	Weak transcription	Fetal Stomach	stomach
16	chr6:13034200-13034800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:13034200-13037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:13034400-13035200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:13034400-13035400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:13034600-13035000	Enhancers	Fetal Brain Female	brain
21	chr6:13034600-13035200	Enhancers	Fetal Heart	heart

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