Variant report

Variant	rs4617457
Chromosome Location	chr1:92707111-92707112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92706202..92709030-chr1:92713250..92715808,3	K562	blood:

Variant related genes	Relation type
ENSG00000174842	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1077783	1.00[EUR][1000 genomes]
rs11164423	1.00[EUR][1000 genomes]
rs11166127	1.00[EUR][1000 genomes]
rs11166136	1.00[EUR][1000 genomes]
rs11166137	1.00[EUR][1000 genomes]
rs11166542	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070923	1.00[EUR][1000 genomes]
rs12071093	1.00[EUR][1000 genomes]
rs12073894	1.00[EUR][1000 genomes]
rs12077180	1.00[EUR][1000 genomes]
rs12078746	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090761	1.00[EUR][1000 genomes]
rs12098095	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17131599	1.00[EUR][1000 genomes]
rs17131621	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35413685	1.00[EUR][1000 genomes]
rs55993081	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs56112620	0.91[EUR][1000 genomes]
rs56665661	1.00[EUR][1000 genomes]
rs57992264	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6603970	1.00[EUR][1000 genomes]
rs6662381	1.00[EUR][1000 genomes]
rs6662565	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6679259	0.88[AMR][1000 genomes]
rs6679419	0.91[EUR][1000 genomes]
rs6681027	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6691918	1.00[EUR][1000 genomes]
rs6694248	0.91[EUR][1000 genomes]
rs72954776	0.91[EUR][1000 genomes]
rs72954787	0.91[EUR][1000 genomes]
rs72954791	0.91[EUR][1000 genomes]
rs72956803	1.00[EUR][1000 genomes]
rs72958703	0.91[EUR][1000 genomes]
rs7519603	0.88[AMR][1000 genomes]
rs7520675	0.88[AMR][1000 genomes]
rs7522789	0.91[EUR][1000 genomes]
rs7527960	0.83[AMR][1000 genomes]
rs7535181	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546528	1.00[EUR][1000 genomes]
rs9661440	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv870667	chr1:92697188-92813741	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92705600-92726800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:92705800-92711400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:92705800-92729200	Weak transcription	Brain Inferior Temporal Lobe	brain

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