Variant report

Variant	rs4617661
Chromosome Location	chr12:50886680-50886681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50884317..50886890-chr12:51151312..51154186,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIP2B-2	chr12:50886563-50886694	l_644_chr12:50885632-50886694_testes

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10431486	0.82[EUR][1000 genomes]
rs10459233	0.84[EUR][1000 genomes]
rs10747583	0.93[ASN][1000 genomes]
rs10747585	0.82[EUR][1000 genomes]
rs10783369	0.81[EUR][1000 genomes]
rs10783370	0.82[EUR][1000 genomes]
rs10783371	0.82[EUR][1000 genomes]
rs10783372	0.82[EUR][1000 genomes]
rs10783373	0.80[EUR][1000 genomes]
rs10783374	0.82[EUR][1000 genomes]
rs10783375	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10783378	0.82[EUR][1000 genomes]
rs10876042	0.82[EUR][1000 genomes]
rs10876043	0.83[EUR][1000 genomes]
rs10876045	0.96[ASN][1000 genomes]
rs10876047	0.82[EUR][1000 genomes]
rs10876051	0.81[EUR][1000 genomes]
rs10876052	0.81[EUR][1000 genomes]
rs10876053	0.82[EUR][1000 genomes]
rs10876055	0.92[ASN][1000 genomes]
rs10876056	0.81[EUR][1000 genomes]
rs10876058	0.82[EUR][1000 genomes]
rs10876059	0.93[ASN][1000 genomes]
rs10876061	0.82[EUR][1000 genomes]
rs10876063	0.82[EUR][1000 genomes]
rs10876065	0.82[EUR][1000 genomes]
rs10876066	0.90[ASN][1000 genomes]
rs11169453	0.99[ASN][1000 genomes]
rs11169470	0.88[ASN][1000 genomes]
rs11169479	0.82[EUR][1000 genomes]
rs11169480	0.82[EUR][1000 genomes]
rs11169481	0.80[EUR][1000 genomes]
rs11169484	0.95[ASN][1000 genomes]
rs11169486	0.93[ASN][1000 genomes]
rs11169487	0.82[EUR][1000 genomes]
rs11169490	0.95[ASN][1000 genomes]
rs11169492	0.93[ASN][1000 genomes]
rs11169493	0.81[EUR][1000 genomes]
rs11169500	0.83[EUR][1000 genomes]
rs11613488	0.82[EUR][1000 genomes]
rs12307178	0.86[ASN][1000 genomes]
rs12372538	0.95[ASN][1000 genomes]
rs12425362	0.90[ASN][1000 genomes]
rs12582683	0.85[ASN][1000 genomes]
rs12582712	0.82[EUR][1000 genomes]
rs12814717	0.93[ASN][1000 genomes]
rs12825915	0.99[ASN][1000 genomes]
rs2090851	0.82[EUR][1000 genomes]
rs2243571	0.85[EUR][1000 genomes]
rs2684908	0.82[EUR][1000 genomes]
rs2700478	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34867510	0.84[EUR][1000 genomes]
rs3893353	0.82[EUR][1000 genomes]
rs3935138	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3935870	0.93[ASN][1000 genomes]
rs4131769	0.82[EUR][1000 genomes]
rs4516034	0.82[EUR][1000 genomes]
rs4768847	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768850	0.82[EUR][1000 genomes]
rs4768852	0.80[EUR][1000 genomes]
rs4768853	0.82[EUR][1000 genomes]
rs4768884	0.82[EUR][1000 genomes]
rs4768888	0.82[EUR][1000 genomes]
rs4768889	0.82[EUR][1000 genomes]
rs4768892	0.82[EUR][1000 genomes]
rs4768893	0.82[EUR][1000 genomes]
rs4768895	0.82[EUR][1000 genomes]
rs55877451	0.80[EUR][1000 genomes]
rs61699126	0.95[ASN][1000 genomes]
rs6580756	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580761	0.81[EUR][1000 genomes]
rs67092086	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7133687	0.86[ASN][1000 genomes]
rs7138604	0.82[EUR][1000 genomes]
rs7305375	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7316864	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7397999	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7487429	0.95[ASN][1000 genomes]
rs7956591	0.82[EUR][1000 genomes]
rs876080	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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