Variant report

Variant	rs4618817
Chromosome Location	chr9:100732802-100732803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100685514..100687681-chr9:100731460..100733588,2	K562	blood:
2	chr9:100725968..100732851-chr9:100740527..100746264,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10760021	0.84[JPT][hapmap]
rs10984193	0.88[CEU][hapmap]
rs10984297	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10984349	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10984361	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs10984375	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10984462	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10984478	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10984484	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10984499	0.89[ASN][1000 genomes]
rs10984588	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984599	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1127703	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12235434	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12236440	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12237296	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12377604	0.84[ASN][1000 genomes]
rs1475695	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs1475696	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17431934	0.84[ASN][1000 genomes]
rs3780416	0.95[CEU][hapmap];0.82[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3780417	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3780418	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3780419	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3808894	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4498663	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67975003	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68053069	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68112593	0.81[AMR][1000 genomes]
rs7024281	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7025609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030887	0.82[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs7030907	0.85[JPT][hapmap]
rs7040232	0.90[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs72753548	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72753572	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72753587	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs755109	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7855917	0.81[AMR][1000 genomes]
rs7864655	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100731400-100733200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100731400-100733600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:100731600-100733200	Enhancers	K562	blood
4	chr9:100732000-100733800	Enhancers	Primary hematopoietic stem cells	blood
5	chr9:100732200-100733000	Active TSS	Fetal Thymus	thymus
6	chr9:100732200-100733200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:100732200-100733400	Flanking Active TSS	Dnd41	blood
8	chr9:100732200-100734600	Active TSS	Thymus	Thymus
9	chr9:100732600-100733200	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr9:100732800-100733000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:100732800-100733200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr9:100732800-100733200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr9:100732800-100733200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links