Variant report
| Variant | rs4620217 |
|---|---|
| Chromosome Location | chr7:104315584-104315585 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs10231269 | 0.80[EUR][1000 genomes] |
| rs10242238 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs10245966 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs10246540 | 1.00[CEU][hapmap] |
| rs10265185 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs10275240 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs10277884 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs10280659 | 0.88[EUR][1000 genomes] |
| rs10487218 | 1.00[CEU][hapmap] |
| rs11760660 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs11761854 | 0.85[CEU][hapmap] |
| rs11762558 | 0.88[EUR][1000 genomes] |
| rs11766478 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs11770573 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs11773248 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs11977439 | 1.00[CEU][hapmap] |
| rs13438590 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17139736 | 1.00[CEU][hapmap] |
| rs17421950 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17490468 | 0.85[CEU][hapmap];1.00[JPT][hapmap] |
| rs17490509 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17490551 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17490586 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs1990704 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs2193204 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs2193212 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs2891725 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs2891729 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs35022976 | 0.97[EUR][1000 genomes] |
| rs3919550 | 1.00[CEU][hapmap] |
| rs4130477 | 1.00[JPT][hapmap] |
| rs4236571 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs4317508 | 1.00[CEU][hapmap] |
| rs59929156 | 0.97[EUR][1000 genomes] |
| rs6948948 | 1.00[CEU][hapmap] |
| rs6950059 | 1.00[JPT][hapmap] |
| rs6964099 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs6967399 | 1.00[CEU][hapmap] |
| rs73181816 | 0.97[EUR][1000 genomes] |
| rs73181817 | 0.97[EUR][1000 genomes] |
| rs7791120 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs7801040 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs7805947 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs929661 | 1.00[CEU][hapmap] |
| rs962648 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv967437 | chr7:104312412-104323208 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv429790 | chr7:104314049-104488049 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
