Variant report

Variant	rs4620600
Chromosome Location	chr1:211255936-211255937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11119677	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119679	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12027884	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124026	0.91[CHB][hapmap]
rs1416065	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2211038	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4265492	0.87[CHB][hapmap]
rs4511184	0.87[ASN][1000 genomes]
rs4592307	0.91[CHB][hapmap]
rs4951493	0.87[CHB][hapmap]
rs4951495	0.91[CHB][hapmap]
rs4951499	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951502	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951504	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951716	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6685217	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211242600-211256400	Weak transcription	A549	lung
2	chr1:211249400-211256000	Weak transcription	HSMMtube	muscle
3	chr1:211249400-211257800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:211249400-211261200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:211249400-211263600	Weak transcription	Brain Anterior Caudate	brain
6	chr1:211249800-211256000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:211249800-211256000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:211249800-211256000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:211249800-211257000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:211250000-211271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:211250400-211265000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:211254800-211256600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:211255400-211256800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:211255400-211259800	Strong transcription	HSMM	muscle
15	chr1:211255800-211256800	Strong transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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