Variant report

Variant	rs4624668
Chromosome Location	chr4:129186530-129186531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10002814	0.91[ASN][1000 genomes]
rs11728141	0.93[EUR][1000 genomes]
rs11733374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505763	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12510308	0.86[ASN][1000 genomes]
rs12511648	0.85[ASN][1000 genomes]
rs12650034	0.96[EUR][1000 genomes]
rs13103317	0.95[EUR][1000 genomes]
rs13103695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1829726	0.85[EUR][1000 genomes]
rs1851399	0.96[EUR][1000 genomes]
rs1851400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1948506	0.85[ASN][1000 genomes]
rs2036687	0.96[EUR][1000 genomes]
rs2101808	0.96[EUR][1000 genomes]
rs2140107	0.87[ASN][1000 genomes]
rs2202805	0.96[EUR][1000 genomes]
rs2391257	0.95[EUR][1000 genomes]
rs34174952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755896	0.96[EUR][1000 genomes]
rs4016	0.96[EUR][1000 genomes]
rs430431	0.89[EUR][1000 genomes]
rs4975180	0.95[EUR][1000 genomes]
rs4975220	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975300	0.89[ASN][1000 genomes]
rs60515985	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62318161	0.92[EUR][1000 genomes]
rs6534674	0.87[ASN][1000 genomes]
rs6534675	0.87[ASN][1000 genomes]
rs6814132	0.96[EUR][1000 genomes]
rs6842987	0.96[EUR][1000 genomes]
rs7666566	0.95[EUR][1000 genomes]
rs7679633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688852	0.85[ASN][1000 genomes]
rs7691103	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3416618	chr4:129181482-129188750	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129173800-129207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:129178600-129190000	Weak transcription	NHDF-Ad	bronchial
3	chr4:129183400-129191200	Weak transcription	Fetal Brain Male	brain
4	chr4:129184600-129206200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:129185800-129186600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:129186000-129187200	ZNF genes & repeats	Placenta	Placenta
7	chr4:129186000-129188000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:129186200-129186600	Enhancers	A549	lung
9	chr4:129186400-129186600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr4:129186400-129191000	Weak transcription	Rectal Mucosa Donor 29	rectum

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