Variant report

Variant	rs4628479
Chromosome Location	chr1:215868952-215868953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11120605	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11120606	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12122359	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12140451	0.88[JPT][hapmap]
rs12403674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12404185	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12408717	0.81[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1342765	0.88[JPT][hapmap]
rs2364859	0.84[CEU][hapmap];0.85[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2364862	0.88[CHB][hapmap]
rs2820691	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2820703	0.82[ASN][1000 genomes]
rs2886198	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2886199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3845525	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3845527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4372227	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap]
rs4375233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4655286	0.88[CHB][hapmap]
rs4655419	0.84[CEU][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes]
rs4655423	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs57472918	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61828172	0.89[EUR][1000 genomes]
rs6665313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7546433	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2763680	chr1:215855883-215870683	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links