Variant report

Variant	rs4629685
Chromosome Location	chr6:56193496-56193497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10456731	1.00[CHB][hapmap]
rs10948995	0.86[AFR][1000 genomes]
rs13205765	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2397216	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2397217	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2397218	0.86[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2397219	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2894835	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6459151	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6459152	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6459153	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6901838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907967	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909274	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6911570	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6912074	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6920577	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6921043	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6924804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926105	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926623	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6927104	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6927335	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6932738	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357911	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370522	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9475665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9475666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9475669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9475671	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56189400-56193600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:56192400-56193600	Enhancers	Fetal Lung	lung
3	chr6:56192400-56194600	Enhancers	Fetal Kidney	kidney
4	chr6:56192600-56193600	Weak transcription	HSMMtube	muscle
5	chr6:56192600-56194000	Enhancers	HUVEC	blood vessel
6	chr6:56192600-56194400	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:56193000-56194200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:56193200-56194800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:56193400-56194600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:56193400-56194600	Enhancers	Fetal Stomach	stomach
11	chr6:56193400-56194600	Enhancers	HSMM	muscle
12	chr6:56193400-56194600	Enhancers	NHLF	lung

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