Variant report

Variant	rs4630625
Chromosome Location	chr18:30845846-30845847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs11081796	0.97[ASN][1000 genomes]
rs11660410	0.82[EUR][1000 genomes]
rs12150734	0.98[ASN][1000 genomes]
rs12150736	0.98[ASN][1000 genomes]
rs12150837	0.98[ASN][1000 genomes]
rs1391025	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1482946	0.82[EUR][1000 genomes]
rs156368	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs156369	0.82[EUR][1000 genomes]
rs16964459	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs182105	0.84[EUR][1000 genomes]
rs190614	0.84[EUR][1000 genomes]
rs200432	0.84[EUR][1000 genomes]
rs2626370	0.82[EUR][1000 genomes]
rs271443	0.84[EUR][1000 genomes]
rs271444	0.84[EUR][1000 genomes]
rs271445	0.84[EUR][1000 genomes]
rs271446	0.84[EUR][1000 genomes]
rs271447	0.84[EUR][1000 genomes]
rs271448	0.84[EUR][1000 genomes]
rs271449	0.84[EUR][1000 genomes]
rs271450	0.84[EUR][1000 genomes]
rs271451	0.84[EUR][1000 genomes]
rs271452	0.84[EUR][1000 genomes]
rs271453	0.84[EUR][1000 genomes]
rs271462	0.84[EUR][1000 genomes]
rs271463	0.84[EUR][1000 genomes]
rs271490	0.84[EUR][1000 genomes]
rs271492	0.84[EUR][1000 genomes]
rs271493	0.84[EUR][1000 genomes]
rs271494	0.84[EUR][1000 genomes]
rs271495	0.82[EUR][1000 genomes]
rs271497	0.84[EUR][1000 genomes]
rs271498	0.84[EUR][1000 genomes]
rs271499	0.84[EUR][1000 genomes]
rs271500	0.84[EUR][1000 genomes]
rs271502	0.84[EUR][1000 genomes]
rs271526	0.86[ASW][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs271527	0.84[EUR][1000 genomes]
rs271528	0.84[EUR][1000 genomes]
rs271529	0.81[EUR][1000 genomes]
rs271530	0.82[EUR][1000 genomes]
rs271531	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs271532	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs271537	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs271538	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs271539	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs271540	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs271575	0.82[EUR][1000 genomes]
rs271577	0.82[EUR][1000 genomes]
rs271578	0.81[EUR][1000 genomes]
rs271579	0.82[EUR][1000 genomes]
rs271581	0.82[EUR][1000 genomes]
rs271583	0.82[EUR][1000 genomes]
rs271585	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs28368446	0.82[ASN][1000 genomes]
rs28374541	0.98[ASN][1000 genomes]
rs28375135	0.98[ASN][1000 genomes]
rs28394340	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28457646	0.98[ASN][1000 genomes]
rs28521216	0.94[ASN][1000 genomes]
rs28633937	0.98[ASN][1000 genomes]
rs402801	0.84[EUR][1000 genomes]
rs418480	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs4319841	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4383225	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4405623	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4432316	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4455039	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4494628	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4505412	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4573999	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs457802	0.84[EUR][1000 genomes]
rs458002	0.84[EUR][1000 genomes]
rs4600534	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632197	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4633796	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs463489	0.84[EUR][1000 genomes]
rs466500	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs466881	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56168034	0.85[ASN][1000 genomes]
rs56675518	0.98[ASN][1000 genomes]
rs56959895	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57082165	0.97[ASN][1000 genomes]
rs57204429	0.85[ASN][1000 genomes]
rs57358360	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58448816	0.98[ASN][1000 genomes]
rs59342170	0.98[ASN][1000 genomes]
rs66481582	0.98[ASN][1000 genomes]
rs66560059	0.98[ASN][1000 genomes]
rs66714151	0.98[ASN][1000 genomes]
rs67134528	0.98[ASN][1000 genomes]
rs67274971	0.98[ASN][1000 genomes]
rs67373469	0.97[ASN][1000 genomes]
rs67560478	0.98[ASN][1000 genomes]
rs67772507	0.85[ASN][1000 genomes]
rs67783924	0.98[ASN][1000 genomes]
rs67881407	0.85[ASN][1000 genomes]
rs68068381	0.98[ASN][1000 genomes]
rs68190773	0.85[ASN][1000 genomes]
rs72947170	0.81[ASN][1000 genomes]
rs72947172	0.82[ASN][1000 genomes]
rs72947174	0.82[ASN][1000 genomes]
rs72948837	0.96[ASN][1000 genomes]
rs72948842	0.96[ASN][1000 genomes]
rs72949130	0.85[ASN][1000 genomes]
rs72951055	0.98[ASN][1000 genomes]
rs72951085	0.98[ASN][1000 genomes]
rs7351024	0.98[ASN][1000 genomes]
rs7351029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs968668	0.82[EUR][1000 genomes]
rs9951961	0.98[ASN][1000 genomes]
rs9952144	0.98[ASN][1000 genomes]
rs9953737	0.85[ASN][1000 genomes]
rs9962637	0.98[ASN][1000 genomes]
rs9962832	0.98[ASN][1000 genomes]
rs9962884	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2753661	chr18:30769502-30854602	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30844800-30849000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:30845000-30848800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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