Variant report

Variant	rs4634877
Chromosome Location	chr1:215267964-215267965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10127656	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs10746454	0.81[CHB][hapmap]
rs10779639	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10779640	0.86[CHB][hapmap]
rs10779644	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10779645	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10779646	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10779647	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10779648	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10779650	0.83[CEU][hapmap]
rs10779651	0.83[CEU][hapmap]
rs10864150	0.90[CHB][hapmap]
rs10864152	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10864153	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11120496	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11120498	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11120499	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11120506	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11120508	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11120511	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11120513	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11120517	0.81[AMR][1000 genomes]
rs12031308	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12039875	0.93[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12061916	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12068734	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12092515	0.94[YRI][hapmap]
rs12120091	0.85[CHB][hapmap]
rs12121761	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12133857	0.90[LWK][hapmap];1.00[YRI][hapmap]
rs12143339	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs12567520	0.81[CHB][hapmap]
rs1339405	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs1339406	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes]
rs2363554	0.89[CHB][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2363564	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2363565	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs2885812	0.94[CHB][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2885815	0.86[CHB][hapmap]
rs3931584	0.84[AMR][1000 genomes]
rs4271184	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4394614	0.81[AMR][1000 genomes]
rs4411107	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4428856	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4440833	0.81[AMR][1000 genomes]
rs4497183	0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4509552	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4509553	0.86[CHB][hapmap]
rs4531266	0.89[CHB][hapmap]
rs4556330	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4573492	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4655276	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655277	0.83[CEU][hapmap]
rs4655391	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4655392	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4655394	0.96[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs6662353	0.81[CHD][hapmap]
rs6666828	0.96[CEU][hapmap];0.86[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6667764	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6672978	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs6683041	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6684084	0.83[CEU][hapmap]
rs6688713	0.90[CHB][hapmap]
rs6699161	0.96[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72735337	0.82[ASN][1000 genomes]
rs7417100	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7513709	0.86[CHB][hapmap]
rs7516689	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7528306	0.94[YRI][hapmap]
rs7541543	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs7547572	0.96[CEU][hapmap]
rs7547655	0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7549136	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv3414160	chr1:215266029-215268252	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215258200-215277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:215258400-215277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215265000-215268600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:215265400-215280800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:215266200-215269400	Weak transcription	Fetal Brain Female	brain
6	chr1:215266600-215268000	Weak transcription	Osteobl	bone
7	chr1:215266600-215276000	Weak transcription	NHDF-Ad	bronchial
8	chr1:215267400-215268000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:215267800-215268600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:215267800-215269600	Enhancers	Fetal Brain Male	brain

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